Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0620 ATGGGGCATTGCTGCAGCAAAAACATTGCCGTCAACAACGAAACGGTCGCCGCCGATCAAGGCTTCAAGCCGCCGCTTCACGCGGCGACATCGTCGCCGGCGCAGCCTTCCGGCAACTCTGTCTCTGGCGCAAGCGATGCGACTCCGGGGAGATACACTCCGGCCAACTCGTTCTCGACCAGCCCCTTCCCGAGCCCTCTCCCGCCAGGCGTGGCGCCCTCGCCGGCGAAGACTCCCGGCAGAAAGTTCCGGTGGCCGCTTCCGCCTCCGTCGCCGGCGAAGCCGATCATGGCGGCGCTGCTCCGGCGGCAGGGGAAGACGAAGCCAAAGGACGGGCCCATACCGGAGGAGCAAGGAGAAGTCGGTGACGGAGAGAGGTCGCTTGATAAGAGTTTTGGTTATGGGAAGAATTTTGGGGCAAAGTTTGAGTTAGGGAAGGAAGTGGGTCGTGGGCATTTTGGTCACACTTGTTGGGCCAAAGGGAAGAAGGGTGAACTCAAAGGACAATCAGTGGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCAGCAATAGCAATTGAAGATGTACGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATACAAATTTGGTCAAATTTTATGATGCATTTGAGGATGTCAACAATGTCTACATAGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGGAGATACACAGAGGATGATGCTAAAGCTATTCTTGTACAAATTCTAGACGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTTCACCGTGATTTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGATGAGAATGCCGCGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGATCAACGCCTCAATGATATTGTTGGCAGTGCTTACTACGTTGCACCTGAAGTGCTTCATAGATCATACAGTGTTGAAGCAGACTTATGGAGTATTGGAGTTATATCATACATATTGTTATGCGGTAGTAGACCATTTTGGGCACGCACTGAATCAGGAATCTTCCGGTCTGTGTTAAGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTAAAGAGACTTCTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTTTAACTCACCCATGGTTGAGAAATGAAAGAAATGCTATTCCTTTAGATATTTTGATTTACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTCTGAGACGTGCAGCATTGAAGGCTCTCTCAAAAGCATTGCCCGAAGACGAGCTTATCTACCTTAGAGCACAGTTTAGCCTCTTGGAACCTAAAGATGGCTGCATTTCACTTGAGAATTTTAGAGTTGCACTGGTGAAAAATGCAACTGACGCAATGAAGGAATCAAGGGTTTCTGACATTTTAAATTTGATGGACCCACTCTCTTATAAAAAGATGGACTTCGAAGAGTTTTGCGCAGCTGCAATCAGTGTATACCAGCTGGAAGTTCATCAAGAATGGGATGGAATTGCTACGACAGCTTTCAAGTATTTTGAAGATGCAGGAAACCGAGTCATTTCAGTTGAGGAGTTAGCTCAGGAGATGAATTTGGGTCCATCAGCTTACTCTCTAATGGGTGACTGGATCAAGAAATCTGATGGAAAACTCAGCTTGGTCGGCTTTACAAAGTTTTTGCATGGTGTCACGATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1791 0.4629 MGHCCSKNIAVNNETVAADQGFKPPLHAATSSPAQPSGNSVSGASDATPGRYTPANSFSTSPFPSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKTKPKDGPIPEEQGEVGDGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHTNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYTEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDENAAMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALTHPWLRNERNAIPLDILIYKLVKSYVRASPLRRAALKALSKALPEDELIYLRAQFSLLEPKDGCISLENFRVALVKNATDAMKESRVSDILNLMDPLSYKKMDFEEFCAAAISVYQLEVHQEWDGIATTAFKYFEDAGNRVISVEELAQEMNLGPSAYSLMGDWIKKSDGKLSLVGFTKFLHGVTMRSSNTRHRQLV* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0620 596 MobiDBLite consensus disorder prediction 61 75 - -
Apr1g0620 596 Gene3D - 422 572 - -
Apr1g0620 596 SMART serkin_6 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0620 596 MobiDBLite consensus disorder prediction 104 127 - -
Apr1g0620 596 MobiDBLite consensus disorder prediction 22 127 - -
Apr1g0620 596 ProSitePatterns Protein kinases ATP-binding region signature. 148 174 IPR017441 GO:0005524
Apr1g0620 596 SUPERFAMILY Protein kinase-like (PK-like) 141 427 IPR011009 -
Apr1g0620 596 Pfam Protein kinase domain 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0620 596 PANTHER CDPK-RELATED KINASE 3-LIKE ISOFORM X1 55 587 - -
Apr1g0620 596 SUPERFAMILY EF-hand 427 583 IPR011992 -
Apr1g0620 596 Gene3D - 443 511 - -
Apr1g0620 596 Gene3D Transferase(Phosphotransferase) domain 1 232 421 - -
Apr1g0620 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Apr1g0620 596 MobiDBLite consensus disorder prediction 30 60 - -
Apr1g0620 596 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 587 - -
Apr1g0620 596 ProSiteProfiles Protein kinase domain profile. 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0620 596 Gene3D Phosphorylase Kinase; domain 1 136 231 - -
Apr1g0620 596 CDD STKc_CAMK 141 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0620 Apr-Chr1 7481199 7489479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0620 1 587 EF-hand Containing Proteins AT3G50530 57.870 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr1g0620 Pkinase 7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0620 - - gmx:100803631 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0620 1 7481199 7489479 Apr1g0620 1 7481199 7489479 ECH