Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0612 ATGTCACAGCCAAGGCAAAACAAGATGATGATGAGTCCAAACGTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGACTGGCTTGGGAGACAAAGAGAGACACCCTTAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCTGTTGTCATCACTGATAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAAGGACCCAAATTCTGCAATAAGAGCTTGCCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAACTGTAATCTTGCATCCTTTGGAGCCCAAAAATTTAATCCATCTATAACAGGAAGGCAAAAATTCAGTAGCCCTTCATGGAATACAGCACCAATCCAATTTCAAGGCACCTCCTCCACTTACTATAATCAGCACATACCACAGTATCCATTTCCGTATCCAGCTTATAGGTATCCTAGTTATCCTCCCCCACAAGACTTATATGAAATGAACTACAATAATGTATATAGTGGACAGCAGCTTCCATTCCGCTGGTTTCCAGCATATTGCCAACCCTTCTATGGCCTTAATAGACAGTTTATTCCAACAGCATATCTGAAAAAGGCACAATTCCCTGACATGTCACCTCAAGAGTTCACAGTTGTTGGCTTATCAGAACCAGTTCCAGCTTCTCCTTCAATTTCTAGCACTGGACTAGTCACAGGAACAGTGCCTGCAACAGGAGTGTTAGAATCCCCCCAAGAACAGAAATCCTCAACTTAA 768 0.4245 MSQPRQNKMMMSPNVAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNTGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASFGAQKFNPSITGRQKFSSPSWNTAPIQFQGTSSTYYNQHIPQYPFPYPAYRYPSYPPPQDLYEMNYNNVYSGQQLPFRWFPAYCQPFYGLNRQFIPTAYLKKAQFPDMSPQEFTVVGLSEPVPASPSISSTGLVTGTVPATGVLESPQEQKSST* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0612 255 SMART rrm1_1 26 98 IPR000504 GO:0003723
Apr1g0612 255 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 255 - -
Apr1g0612 255 PANTHER BOULE-RELATED 1 255 IPR037366 GO:0003729
Apr1g0612 255 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Apr1g0612 255 CDD RRM_RBM24_RBM38_like 25 100 - -
Apr1g0612 255 Gene3D - 1 114 IPR012677 -
Apr1g0612 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Apr1g0612 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0612 Apr-Chr1 7403116 7405432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0612 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 7.12e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0612 - - gmx:100788634 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0612 1 7403116 7405432 Apr1g0612 1 7403116 7405432 ECH