Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0610 ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCAGCGGACTCGAGTGAGGTTGAGAAATCGAAAACCAGAGGCGATCAGAATCTGAACAACGGTGTGTTCAACCACCAAGAAAGAGTTTCCAGCACCGTGTCAGTTCCTAACAGCAATTACAACAACTACAAGGCTCAGATGCACGCAAATGGAGTGAACAATGATGGGTATGGGATGAATGGGGAGAATGGAGGCGATAGTTTCAAGCGTGATATGAGAGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAATTTGTGCCTCCATCACTGGCCAATAATCATGGCTACTTAACTGGACCTAATGCTGGCTTTGGTTACGCTAACAATTTTATACTGCACAATAATTTTGGCAATACTAATGGCCAAACTAACAACAGAAGGAGGAAGAATGGCTATAGTGCTGGGAAGAGAAGAGTGAATCATAAAATAGACATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTATATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGTCAGGTTGTTGATTGCCGCGTATGTGGAGATCCTAATTCTATTCTCCGATTTGCCTTCATTGAGTTTACTGATGAAGATGGTGCGAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCTCTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCCGTTAATCCTACATTTTTGCCAAGGTCTGAAGATGAAAGGGAGATGTGCTCGAGAACGATTTATTGCACCAACATCGACAAGAAGCTTACTCAAGCAGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGCGTGATTTTAGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACGCCAGTCCGATCTCGCGCGCCTCGGACTTCTATCCACTGA 1101 0.4514 MAVAENVGAKIGSSSQNLDNSVVSADSSEVEKSKTRGDQNLNNGVFNHQERVSSTVSVPNSNYNNYKAQMHANGVNNDGYGMNGENGGDSFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGYLTGPNAGFGYANNFILHNNFGNTNGQTNNRRRKNGYSAGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKNFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRTSIH* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0610 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 354 IPR000504 GO:0003723
Apr1g0610 366 MobiDBLite consensus disorder prediction 9 28 - -
Apr1g0610 366 MobiDBLite consensus disorder prediction 144 163 - -
Apr1g0610 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 246 IPR000504 GO:0003723
Apr1g0610 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 347 IPR000504 GO:0003723
Apr1g0610 366 SUPERFAMILY RNA-binding domain, RBD 152 257 IPR035979 GO:0003676
Apr1g0610 366 CDD RRM1_CID8_like 179 258 IPR034823 -
Apr1g0610 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 256 IPR000504 GO:0003723
Apr1g0610 366 Pfam Ataxin-2 C-terminal region 102 116 IPR009818 -
Apr1g0610 366 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 365 - -
Apr1g0610 366 SUPERFAMILY RNA-binding domain, RBD 269 360 IPR035979 GO:0003676
Apr1g0610 366 MobiDBLite consensus disorder prediction 1 44 - -
Apr1g0610 366 Gene3D - 141 258 IPR012677 -
Apr1g0610 366 Gene3D - 265 361 IPR012677 -
Apr1g0610 366 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 365 - -
Apr1g0610 366 CDD RRM2_CID8_like 274 355 IPR034825 -
Apr1g0610 366 SMART rrm1_1 279 350 IPR000504 GO:0003723
Apr1g0610 366 SMART rrm1_1 182 252 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0610 Apr-Chr1 7352741 7359838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0610 180 342 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 1.69e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0610 - - gmx:100787572 649.047