Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0609 ATGAGTGGTCGCTTCTCTCGCACAATTTATGTTGGCAACTTGCCATCCGACATAAGGGAATCAGAAATTGAAGATCTGTTTTACAAGTATGGCCGTATAATAGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCGGAAGATGCAATTCGAGGTCGGGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGGGGATACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGGAGGTGGTGGCGGCGGCGGCCGATTTGGCATCTCGCGCCATTCTGAATATCGAGTTATTGTTCGTGGACTGCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAGGCTGGTGATGTTTGTTTTGCTGAGGTTTCACGTGATAGTGAAGGAACTTTTGGCATTGTTGATTACACAAACTATGATGACATGAAATATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGGGTAGTCGTTCTAGGAGCAGGAGCAGAAGCAGAAGCCCCAGCAGGAGCAGAAGTCCCAAAAGGGCTAGGTCACGATCTTTGGAACGATCTGTGTCTAGGTCACGATCTAGATCTCGATCTGCATCACCAATCAAGTCTTCCAGGCCAAGATCACGATCACGATCACGATCTGGATCTCCACGCCAGGTGCTGTCAGGTAGTGGTTGA 804 0.4813 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIIDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGGGGGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSRSGSPRQVLSGSG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0609 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Apr1g0609 267 MobiDBLite consensus disorder prediction 81 113 - -
Apr1g0609 267 CDD RRM1_SF2_plant_like 8 79 - -
Apr1g0609 267 SUPERFAMILY RNA-binding domain, RBD 6 191 IPR035979 GO:0003676
Apr1g0609 267 MobiDBLite consensus disorder prediction 199 267 - -
Apr1g0609 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 264 - -
Apr1g0609 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Apr1g0609 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 186 IPR000504 GO:0003723
Apr1g0609 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Apr1g0609 267 MobiDBLite consensus disorder prediction 220 234 - -
Apr1g0609 267 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 264 - -
Apr1g0609 267 Gene3D - 121 199 IPR012677 -
Apr1g0609 267 Gene3D - 2 118 IPR012677 -
Apr1g0609 267 SMART rrm1_1 123 192 IPR000504 GO:0003723
Apr1g0609 267 SMART rrm1_1 8 78 IPR000504 GO:0003723
Apr1g0609 267 CDD RRM2_SF2_plant_like 122 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0609 Apr-Chr1 7340778 7346462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0609 6 180 Eukaryotic Initiation Factors Gene Family AT4G34110 24.309 4.71e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0609 K12890 - gmx:100800653 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0609 1 7340778 7346462 Apr1g0609 1 7340778 7346462 ECH