Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0607 ATGGGTTCCAGCGAGTTGGCTTGCATATACGCCTCTCTCATTCTCCACGATGAAGAGATCCCAATTAGCGCGGAGAAAATCAATACTTTGTTGAAGGCTGCTAATGTTTGTGTTGAGTCCTACTGGCCCGGCCTCTTCGCCAGACTCGCCAACAGCAGGAACATCGATGACCTCATTTTTAACTGTGGCACCGCCGGCGGTGCTGCCGTTGCCGTTTCCGCTCCTGCCGCTGCCGCCGGTGGTGGTGGTGCTGCCGCCGCACCTGCTGCTGAGGAAAAGAAGGAAGAGCCGAAGGAAGAAAGTGACGACGACATGGGTTTTAGTTTGTTTGATTAG 336 0.5417 MGSSELACIYASLILHDEEIPISAEKINTLLKAANVCVESYWPGLFARLANSRNIDDLIFNCGTAGGAAVAVSAPAAAAGGGGAAAAPAAEEKKEEPKEESDDDMGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0607 111 Gene3D - 2 63 IPR038716 -
Apr1g0607 111 CDD Ribosomal_P1 5 63 - -
Apr1g0607 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Apr1g0607 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 111 - -
Apr1g0607 111 MobiDBLite consensus disorder prediction 79 111 - -
Apr1g0607 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Apr1g0607 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Apr1g0607 111 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0607 Apr-Chr1 7329472 7331134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0607 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.140 7.22e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0607 K02942 - mnt:21402570 118.627