Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0602 ATGGGGGAGGTGGTGACGAGTGGAGACAAGTTACTCAGAGTGGAAGAGGAGGTGGAAGTACTCCAAGAGAAGCACACGGAAGAAGAGAGTTTAAGTGGGAGCAAAGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTCTTGCCCAGGATGATTCTGAGGGTGCTCTTGGTTGAAGCTGATGATTCCACTCGCCAGATTATAGCTGCGCTTCTCAGGAAATGCAGTTACAAAGTGGCTGCTGTTCCTGATGGCCTGAAGGCATGGGAGTTACTCAAGGGAAGACCACACAATGTTGATCTAATATTGACAGAAGTTGATTTGCCATCCATATCTGGCTATGCGCTTCTCACATTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCCTCACAAGATTCAATTAGCACGGTATACAGATGCATGCTGAGAGGTGCCGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAACTGAGGAATTTGTGGCAACATGTTTGGAGAAGACAATCCTCAACCATGGGCGTCAATGGCCCTCAAGACGAGAGTGTTGCTCAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGCTGCTAGTAATCGTTCAAGTGGCGATGCCGCATGCATTCAGAGAAATAAGGAATTGATTGAGAAAGGAAGTGATGCGCAGAGCTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTGGCCCGGTCGATAAGGTGCAGGAATTTTCTCTGTTGAAATCCGGGGAAGCATATCCAAATGGAACAGAGACACAGGAGGTCGAAACATGTATTCGTTTAGGCCAGACATTGATGAGGCATAACAGTAATGCTGGAGGTATCCACAAAAATGGTGAGACAAGCACAACTAATGGCAAGGATGGTGATCCAGAGCATTTTGGGAGTGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCTAGGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCAAACTGCAGTCTCAAAAACCCCTCAGTTAATTGCACAGGAATGTTGGACTTTTCTCCTCAGTTGGATCTTTCCCTGAGAAGATCTCATCCCAGCAGTTTTGAGAATGAACCCACTGAAGAAAGGCACACCCTCATGCATTCGAATGCATCAGCTTTCAAGCGGTATACTAACAAGCCATCACAAGGCTCGCCTCCTGCAGTGTTAATTAACTTCTCCGACCAACAGAAAGAACAAAGAACAAATGGTGAGAAAAATATCTCTCATATTGCCACTGGCTGCAATTCTGATAGTTCAACGCCTAGCACGCAACGATGTATCTTGTCTCCAACCACAGTCCAATCAAAAGAATCTGAACTTGCAACCTCACACTCCCATCAAGGGCATTCATTCCCAATTCCAGTAAAAGGTGTGAGGTTCAACGATCTACGTACAGCCTATGGTTCTGTACTTCCTCCAGTGTTTCATACACAGTCTGGTCCACCATCAATGCCAAGTCCAAGTCCAGTTGTGATCCTTGAACCAAACTTTCAAGTGAATACATTTTATCAGTCAAATATGAAAGAGAGCAGTTCAGAGCAGCTTTATGAACCTCGCGGCCCAAATGGAAACAGCACCACAAACCACGTTGTGTACACGCATGAACACAAATCAGAACATGGAGAGGAGCGAGGACACATATCTCCAGCAACTGATCAAAGTGTATCTAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATCGGTTATGGAAGCAATTGTGGCAGTAATAGCAATGTTGATCAAGTTGCCACTGTCAGGGCAGCTTCAGAAGGTAAGAATGGAGACCTCACAAACAACGGAAACTCTCATCGATCAATCCAAAGAGAAGCAGCTCTGAACAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCAAGAGTGAAAGGACAATTTGTTCGTCAAGTGCATGCTGATCCTCTTGTTGCAGAAAAAGATGGCAAAGAATAA 2061 0.4454 MGEVVTSGDKLLRVEEEVEVLQEKHTEEESLSGSKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYRCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTMGVNGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGPVDKVQEFSLLKSGEAYPNGTETQEVETCIRLGQTLMRHNSNAGGIHKNGETSTTNGKDGDPEHFGSASISGEAHDNHYVQINSSREAIDLIGAFHTHPNCSLKNPSVNCTGMLDFSPQLDLSLRRSHPSSFENEPTEERHTLMHSNASAFKRYTNKPSQGSPPAVLINFSDQQKEQRTNGEKNISHIATGCNSDSSTPSTQRCILSPTTVQSKESELATSHSHQGHSFPIPVKGVRFNDLRTAYGSVLPPVFHTQSGPPSMPSPSPVVILEPNFQVNTFYQSNMKESSSEQLYEPRGPNGNSTTNHVVYTHEHKSEHGEERGHISPATDQSVSSSFCNGNASHLNSIGYGSNCGSNSNVDQVATVRAASEGKNGDLTNNGNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHADPLVAEKDGKE* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0602 686 SUPERFAMILY CheY-like 53 177 IPR011006 -
Apr1g0602 686 ProSiteProfiles CCT domain profile. 630 672 IPR010402 GO:0005515
Apr1g0602 686 MobiDBLite consensus disorder prediction 281 312 - -
Apr1g0602 686 Pfam Response regulator receiver domain 55 166 IPR001789 GO:0000160
Apr1g0602 686 MobiDBLite consensus disorder prediction 281 301 - -
Apr1g0602 686 Coils Coil 11 31 - -
Apr1g0602 686 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 30 663 - -
Apr1g0602 686 MobiDBLite consensus disorder prediction 555 577 - -
Apr1g0602 686 Gene3D - 51 260 - -
Apr1g0602 686 SMART REC_2 53 168 IPR001789 GO:0000160
Apr1g0602 686 CDD psREC_PRR 55 158 - -
Apr1g0602 686 Pfam CCT motif 630 672 IPR010402 GO:0005515
Apr1g0602 686 ProSiteProfiles Response regulatory domain profile. 54 172 IPR001789 GO:0000160
Apr1g0602 686 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 663 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0602 Apr-Chr1 7261042 7266583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0602 328 675 Response Regulator Gene Family AT5G24470 31.933 1.70e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Apr1g0602 Response_reg 1.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0602 K12130 - gmx:100777119 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0602 1 7261042 7266583 Apr1g0602 1 7261042 7266583 ECH