Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0587 ATGGGTTCGGTTGAGTGTTATCGGGCGCGTGAGGATGAGATGGCGGTGGTGTCTCTGAATTCACTGCCTTTGGGGTTCCGATTCCGACCAACGGACGAGGAACTCATCGATTACTACCTGCGACAGAAGATCAACGGTAATGGTGACGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAACCATGGGATATGCCTGATTTGTCGGTGGTACGGAACAAGGATCCAGAGTGGTTTTTCTTCTGTCCACAGGACAAAAAGTATCCAAATGGGCATCGATTGAACCGAGCAACGAATCATGGGTATTGGAAGGCAACGGGGAAGGATCGTAAGATAAAATCTGGGTCTAGCTTGATTGGAATGAAGAAGACTTTGGTCTTTTATACTGGTCGTGCACCCCGAGGGAAGAGAACCAATTGGGTTATGCACGAGTATCGTCCCACCTTGAAGGAGCTTGATGGTACCAACCCTGGACAGAATGCATATGTCCTTTGTCGCTTATTTAAGAAACAAGATGAGAGCCTTGAGATTTCAAACTGCGATGAAGTGGAGCAGACTGATTCAACTCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATGTGGCTCTTGTTGCAGTATCCCCGTCACAGGTTACAGAATATGATAAGCCTCTGGCAATTATCCCCGCAAACTCTGAGGAAGCAATATCCAACATCATAACCCCGGTTGATTGCCAAAGTGACGGATATGATGCTTATGATAGAAAAAATCAAATTGTAGGACCAGTTGCAGAGGATGTTCAGCCATTGAACTTTGACATATATTATGACCCAAACAACCAGCTATTGGATGACAAATTATTCTCCCCTGTACTTGTGCATATTCCACCAGAAATTCATTATCAAGCGAACAACGAATCAGAAGGTCGATGTGGGCTTCAATATGGTACAAATGAGACAAATATTTCAGAATTTTTGAATTCAGTTGTTAACTGGGATCAACTCCCCTTTGAGGAACCCGGTTGTCAACAGCAGAACTACCCCTTGTTCAATGTTAAGGACAATATATTAGGCAGTGACTTAGATGCTGAACTTGCCAATATGACATGTATGCAAGCTGTGTATCCTGAGGAGGCAATTGACAGAAGGATTCCTTTGGTGACAACAGCAGAATTTTGCAGCAACACTGGCATCACCACTGAACATAGTGGTGATGAGCAGAAGAGCAGTGTTGGGTTATTTCTAAACAATTCTCAGATGGTTTTTCCATCTGATGTTAGTATGGCCCAAGTATACAATGTAGTCGATGATTATGAGCAACCAAGAAACTATAATACAGTTGCTAGTGGGAATAGTGGAATCATAAGGAGGAGTCGACAGGGACGAAATGAACTGCTAGGCACAAACACAGTCCAAGGTACTGCACAAAGGAGAATTCGTTTGTTAAAGGATATGCAAGACTCAAATAGGATGGTGAGGAATAAGAGTTGTGCACAAGAAGAACTTAATTCAACACCAACTATTGCAGTGGAGGAGAAAGCTGCAGAAAGTCATGCTTCTGATGAAAGTGCTGCTCTTACTAATGATGTGAATGAACTGAAGAACACATTTGAATCAATTGGCAATAGAAAGATTTCAAGACAAGTTACAAAAGTATGCTCTAACTTGGGGCTAGAAGACCTTTTATTGCTCAGAAGGGTGCCTTACATTTCAAAGGCTTCCTCCAATCACAGCATGTGGTCTTCTGTTTTTGTAGTTTGTGCTTTTGTAATGGTCTTCTTAGTGGTCTTTACTGACATGTGGGGATATATTAAATGTTGA 1815 0.4248 MGSVECYRAREDEMAVVSLNSLPLGFRFRPTDEELIDYYLRQKINGNGDEVWVIREIDVCKWEPWDMPDLSVVRNKDPEWFFFCPQDKKYPNGHRLNRATNHGYWKATGKDRKIKSGSSLIGMKKTLVFYTGRAPRGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKQDESLEISNCDEVEQTDSTPMAANYSPEEIQSDVALVAVSPSQVTEYDKPLAIIPANSEEAISNIITPVDCQSDGYDAYDRKNQIVGPVAEDVQPLNFDIYYDPNNQLLDDKLFSPVLVHIPPEIHYQANNESEGRCGLQYGTNETNISEFLNSVVNWDQLPFEEPGCQQQNYPLFNVKDNILGSDLDAELANMTCMQAVYPEEAIDRRIPLVTTAEFCSNTGITTEHSGDEQKSSVGLFLNNSQMVFPSDVSMAQVYNVVDDYEQPRNYNTVASGNSGIIRRSRQGRNELLGTNTVQGTAQRRIRLLKDMQDSNRMVRNKSCAQEELNSTPTIAVEEKAAESHASDESAALTNDVNELKNTFESIGNRKISRQVTKVCSNLGLEDLLLLRRVPYISKASSNHSMWSSVFVVCAFVMVFLVVFTDMWGYIKC* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0587 604 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Apr1g0587 604 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Apr1g0587 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 462 - -
Apr1g0587 604 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Apr1g0587 604 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Apr1g0587 604 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 15 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0587 Apr-Chr1 7128745 7132284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0587 14 222 NAC Transcription Factor Family AT4G35580 65.072 9.83e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0587 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0587 - - gmx:100777071 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0587 1 7128745 7132284 Apr1g0587 1 7128745 7132284 ECH
Apr9g1077 9 20197027 20200947 Apr1g0587 1 7128745 7132284 PCT