Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0585 ATGAAGACAATTCTTTCCTCAGAGACAATGGACATCCCTGATGGGGTGAGTATCAAAGTCCACGCCAAAGTCATCGAGGTTGAAGGTCCTCGCGGAAAGCTTGTTCGAGACTTCAAGCATCTCAACCTCGATTTCCAACTCATCACCGACGAAAACGGCAAGCGAAAGCTCAAAATCGAGTCCTGGTTCGGCTCTCGCAAAACCTCCGCCGCCATTCGCACTGCCCTCAGCCACGTCGAGAACCTCATAACCGGCGTCACCAAGGGATACCGCTACAAGATGAGATTCGTCTACGCTCATTTCCCAATCAATGCTAGCATCACCAACAGCAACAAATCCATCGAGATCCGAAACTTCCTCGGCGAGAAGAAGGTTCGGAGAGTGGACATGCTTGGCGGCGTTTCTGTTGTGCGATCTGAAAAGGTGAAGGATGAACTGGTTTTGGATGGAAATGATATTGAACTTGTTTCTAGGTCTTGTGCTCTCATTAACCAGAAATGCCATGTTAAAAATAAGGATATCCGGAAGTTTCTTGATGGTATTTATGTTAGCGAGAAGGGAACAATAGTGGAAGAGTAG 579 0.4732 MKTILSSETMDIPDGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGKRKLKIESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNFLGEKKVRRVDMLGGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVEE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0585 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 192 - -
Apr1g0585 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Apr1g0585 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Apr1g0585 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0585 Apr-Chr1 7104263 7105101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0585 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 86.528 5.92e-122 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0585 K02940 - gmx:100306058 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0585 1 7104263 7105101 Apr1g0585 1 7104263 7105101 ECH