Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0566 ATGGACTCGTCCCCGTCGTCATCATCTGGTAGTAATAACACTGTGAATTGGTTTGGGATGAGTTTTCCCTTTACTTCTCCACTCTCTCTCGTCATGGATTACTGCACGCGCGAGGATTCTGTTGAGCCTGTCATAATCATTCCTCGTACGCGCCCTCGGTTTCAGGTTCAATCTGAATCTGCTTCTGCGTCTGATTCTGATTCTGATTCTGGTGGCAGTGCCTGTAACGGTGCTGAGGAAGTTGCCATACGCATAATTGGGGGTGGGGAGCAAGAGAACAGTTCTTCTTCGTCGTCGTCATCGGCGGCGGCGTCTCGTAATCGGGTTGGGGAATCGAGCTGTGATGACGCCGTGGTTGGAAGAAGTGGGATGCTGTCGCCGGAGGCTCGCCGGCGAATGGCTGAGGAGAGGGTTCCGTTGGTGTCTTTGGCTGATGGGATTGGTGGTGGTAGGGATTCCACGTCCTCTGCTTATCAGCGGTATGATATTCAGCAGATTGCCAAGTGGATTGAGCAGATTCTCCCTTTCTCCCTCTTGTTGTTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTGTATCAGCTGTGATGTTCAAATCAAATGATGTTGTTAAGAAGCAGACAGCTCTGAAGGGAGATCGGAAAGTTTCTGTTCTTCTTGGTATCTCTTTTGCCTTCATGCTGCATGTGATAAGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCGTTGGCCATGTTTCCACCAAAAGCAACACCACCTTTTTGGCATGCCATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGTGATGGCTTTCAAGTGTGTGTTGCTTATTTACTGCAAAAATGGCAGAGGTCATAACTTCCGTCGACAGGGTCAAATGTTAACACTGGTTGAATACACTCTGCTGTTGTATCGTGCCTTGTTGCCAACACCTGTTTGGTACCGTTTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCACTGACTACAGGATTGTATCTAACTTTCAAGCTAACATCTGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCACTATCAAAGAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTGAATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCGTGCTCCTATATTGTTGTGCTGTAAACACATGTTCTGCGAAGAGTGTGTATCTGAATGGTCAGTTAATTGTTTTATTCATTGTTTGGACCTTTTAAATTGGAAGCTCACTCTATTCATGCAGTTGTGTGTGAAATTTTATAGCTGGATGCCCCACTTATTTGATTTCTTCACCGAGAAGATGTATAGGTCCCCCTCATCTCATATGAGCTCATCTGTTTCAACATCTCAAGGAATATTTCCAACTTCAAGAATTGGAAATTGTGAATCCCCCGATGTTGGGGCTTCTTCTTCTCTTTCCCGGCCTAATGCAGATACGAATGAAAATGATGAAACAGACTTGCTCTCAATATCTTGGAATCAGGACTATGGTTGCTTTGCTGCTGGCACCAGTCATGGTTTTCGTATCTATAATTGTGAACCTTTCAAAGAAACTTTCAGACGTGATTTAAAAAGTGGTGGTTTTAGAATTGTGGAGATGCTGTTCCGCAGCAATATTTTAGCACTTGTTGGTGCTGTAGCTAATTCCCATTATCCACCCAATAAAGTTTTGATATGGGATGATCATCAGAGCAGGTGCATTGGTGAATTTACATTTAGGTCTGAAGTTCGGGGAGTGAAATTAAGACGTGATCGAATTGTAGTTGTTCTTGAGCACAAGATATATGTTTATAATTTCATGGATTTGAAGCTTCTTCATCAGATTGAGACTTTGGCGAATCCAAGGGGGTTGTGCTGTCTTTCACACCATTCAAATGCATTTGTTTTGGCTAGTCCAGGTCTTTATAAAGGACAGGTTCGAGTTGAACACTTTGGATTGAACATGACAAAATTAATCAATGCTCATGATTCTCAAATTGCATGCTTCACTCTGACAATGGATGGGCTCCTTCTTGCAACTGCTAGTGTTAAGGGCACCTTGATTAGAATCTTCAATACAATGGATGGGTCTCGTTTACAAGAAGTAAGAAGAGGGGTGGATAGAGCTGAAATCAACAGTTTAGCTCTGTCTCCAAATGTCCAGTGGTTGGCAGCATCAAGTGACAAAGGCACTGTTCATGTATTCAGCTTGAGAGTGAGGGTGTCTGGGGAGGATAGTTTGACTCAGCCAAATGCTACCCAAGGACCAGCACTGTTTCATCAGAATTCTTCAACTTCTCTGGATCCGTTGATTTCCCCAAATACTGGTGCCAACCCCAATTCATCATTATCTTTCATGAGAGGAGTCTTACCAAAATATTTTAGCTCAGAATGGTCATTCGCACAGTTCCACTTGCCTGAAAATACTCATTTCATTGTGGCATTTGGATCTCAGAACACCGTCATAATTGTTGGCATGGATGGGAGTTTCTACAGATGTAGCTTTGATCCAGTACAAGGGGGAGAGATGGTGCAGCAGGAGTATGTTCGTTTCCTAAAATTTGAAAATAGACCAATATAA 2634 0.4309 MDSSPSSSSGSNNTVNWFGMSFPFTSPLSLVMDYCTREDSVEPVIIIPRTRPRFQVQSESASASDSDSDSGGSACNGAEEVAIRIIGGGEQENSSSSSSSSAAASRNRVGESSCDDAVVGRSGMLSPEARRRMAEERVPLVSLADGIGGGRDSTSSAYQRYDIQQIAKWIEQILPFSLLLLIVFIRQHLQGFFVTICVSAVMFKSNDVVKKQTALKGDRKVSVLLGISFAFMLHVISIYWWYRNDDLLYPLAMFPPKATPPFWHAIFIILVNDTLVRQAVMAFKCVLLIYCKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDMCAICQEKMRAPILLCCKHMFCEECVSEWSVNCFIHCLDLLNWKLTLFMQLCVKFYSWMPHLFDFFTEKMYRSPSSHMSSSVSTSQGIFPTSRIGNCESPDVGASSSLSRPNADTNENDETDLLSISWNQDYGCFAAGTSHGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRSNILALVGAVANSHYPPNKVLIWDDHQSRCIGEFTFRSEVRGVKLRRDRIVVVLEHKIYVYNFMDLKLLHQIETLANPRGLCCLSHHSNAFVLASPGLYKGQVRVEHFGLNMTKLINAHDSQIACFTLTMDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSLALSPNVQWLAASSDKGTVHVFSLRVRVSGEDSLTQPNATQGPALFHQNSSTSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPENTHFIVAFGSQNTVIIVGMDGSFYRCSFDPVQGGEMVQQEYVRFLKFENRPI* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0566 877 MobiDBLite consensus disorder prediction 89 108 - -
Apr1g0566 877 ProSiteProfiles Zinc finger RING-type profile. 391 425 IPR001841 -
Apr1g0566 877 MobiDBLite consensus disorder prediction 54 74 - -
Apr1g0566 877 SMART ring_2 391 425 IPR001841 -
Apr1g0566 877 MobiDBLite consensus disorder prediction 89 119 - -
Apr1g0566 877 SMART WD40_4 670 710 IPR001680 GO:0005515
Apr1g0566 877 SMART WD40_4 713 754 IPR001680 GO:0005515
Apr1g0566 877 SMART WD40_4 493 536 IPR001680 GO:0005515
Apr1g0566 877 SMART WD40_4 588 623 IPR001680 GO:0005515
Apr1g0566 877 ProSitePatterns Zinc finger RING-type signature. 406 415 IPR017907 -
Apr1g0566 877 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 418 - -
Apr1g0566 877 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 418 IPR044235 GO:0061630|GO:1904294
Apr1g0566 877 SUPERFAMILY WD40 repeat-like 507 755 IPR036322 GO:0005515
Apr1g0566 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 426 IPR013083 -
Apr1g0566 877 MobiDBLite consensus disorder prediction 54 73 - -
Apr1g0566 877 SUPERFAMILY RING/U-box 382 422 - -
Apr1g0566 877 Gene3D - 503 847 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0566 Apr-Chr1 6893944 6938825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0566 49 418 C3H Transcription Factor Family AT5G01960 64.054 1.39e-164 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0566 K22991 - aprc:113864793 1728.38