Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0562 ATGAAGTTGCAGTTATCAATTGTTGCTCTTGTTCTATTAAGCTCCACACTGTCTCTCTTTGGCTTGAGTGTAGCTGACTTGAACTCTGACCAAAAAGCTCTCTTGGAGTTTGCTGCTTCTGTCCCACATGCACCAAGGCTCAACTGGAATGACTATTCTTCAATATGTACCTCATGGCTTGGGGTGACTTGCAACTCAAATGGCACACGTGTCGTAGGCCTCCACCTTCCAGGAATGGGATTAACAGGGTCCATTCCAGAGAACAGCATAGGAAAACTAGATGCTCTAAGGGTCCTGAGTCTTCATTCCAATGGCCTTAAAGGAAATATTCCTTCTAACATCCTTTCCATTCCTTCACTCCAATTTGCACACCTACAGCACAATAACTTCTCTGGCCTAATTCCTTCTCCTGTGTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACTCATTTTCTGGCAATATCCCACCTACATTTCAGAACCTTAGAAGACTCACGTGGTTGTACCTCCAAAACAACTCCATATCAGGATTTATTCCTGACTTTAACCTTCCAAGTCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAGTTCCATCAAGACATTCCCTTCTACTTCTTTTGTTGGAAACTCTCTCTTATGCGGTCCACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCCTCTCCTTCTTCTGATTACCAGCCGAGTACTCCAGAAACCACTCAAAACCAAAAAGCTACAACACATAAGAAAAGCTTTGGCCTAGCTACTATCCTTGCACTCGTCATTGGGAGCATTGCCTTCCTCTCTCTACTAGTTGTAATAATCTCTGTGTGCTGTTTGAAGAGGAAGAAAAACATTAAAAGCAGTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGAAAGCCTGAGGTTTCAAAGAGTTTTGGGAGTGGTGTGCAAGGGGCTGAAAAGAACAAGTTGTTTTTCTTTGAAGGTTCATCTTATAGCTTTGACCTTGAGGATTTGCTAAAGGCTTCAGCTGAAGTTCTAGGAAAAGGGAGCTATGGAACAGCATACAAGGCTGTTTTGGAGGAAGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCATTTGGAGATTGTGGGAAGAATTGGACACCATCCCAATGTCATGCCCCTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACTCCATTAGATTGGGATTCCAGAGTGAAGATTTCACTTGGAGCTGCAAAGGGAATAGCATTCATTCACTCAGAGGGTGGTCCAAAATTCACACATGGCAACATAAAGTCAACCAATGTGCTCATAACCCAAGAACTTGATAGCTGCATCTCTGATATTGGTTTGCCTCCTCTAATGAACACACCAGCAACCATGTCTAGATCCAATGGTTATAGAGCACCAGAAGTTTCTGATTCAAGAAAGATCACTCAAAAATCTGATGTATACAGCTTTGGTGTGCTGCTGCTTGAAATGCTAACAGGAAAGAGCCCAATGAGATATCCTGGTCATGAAGATGTGGTTGATCTTCCAAGATGGGTGAGGTCTGTTGTTAGAGAGGAATGGACAGCTGAAGTCTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAAATGGTGCAAATGCTTCAGATTTCATTAGCATGTGTAGTTAAGGTGCCAGATATGAGGCCTAGAATGGATGAAGTTGTTAGAATGATAGAGGAAATTAAGCATCCTGAGATGAAGAACCGGCCATCTTCTGAGTCTGAGTCTGCTGTGCAGACACCATAA 1914 0.4253 MKLQLSIVALVLLSSTLSLFGLSVADLNSDQKALLEFAASVPHAPRLNWNDYSSICTSWLGVTCNSNGTRVVGLHLPGMGLTGSIPENSIGKLDALRVLSLHSNGLKGNIPSNILSIPSLQFAHLQHNNFSGLIPSPVSPKLIALDISFNSFSGNIPPTFQNLRRLTWLYLQNNSISGFIPDFNLPSLKYLNLSYNNLNGSIPSSIKTFPSTSFVGNSLLCGPPLNHCSTISPSPSPSSDYQPSTPETTQNQKATTHKKSFGLATILALVIGSIAFLSLLVVIISVCCLKRKKNIKSSGILKGKASCAGKPEVSKSFGSGVQGAEKNKLFFFEGSSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGRIGHHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKISLGAAKGIAFIHSEGGPKFTHGNIKSTNVLITQELDSCISDIGLPPLMNTPATMSRSNGYRAPEVSDSRKITQKSDVYSFGVLLLEMLTGKSPMRYPGHEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQISLACVVKVPDMRPRMDEVVRMIEEIKHPEMKNRPSSESESAVQTP* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0562 637 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Apr1g0562 637 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
Apr1g0562 637 CDD STKc_IRAK 352 617 - -
Apr1g0562 637 Pfam Leucine rich repeat 141 198 IPR001611 GO:0005515
Apr1g0562 637 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Apr1g0562 637 MobiDBLite consensus disorder prediction 232 254 - -
Apr1g0562 637 ProSitePatterns Protein kinases ATP-binding region signature. 352 383 IPR017441 GO:0005524
Apr1g0562 637 SUPERFAMILY Protein kinase-like (PK-like) 350 617 IPR011009 -
Apr1g0562 637 Pfam Protein kinase domain 350 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0562 637 PANTHER RECEPTOR-LIKE KINASE 3 636 - -
Apr1g0562 637 PANTHER OS05G0588300 PROTEIN 3 636 - -
Apr1g0562 637 Gene3D Phosphorylase Kinase; domain 1 313 421 - -
Apr1g0562 637 MobiDBLite consensus disorder prediction 618 637 - -
Apr1g0562 637 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Apr1g0562 637 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0562 637 SUPERFAMILY L domain-like 40 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0562 Apr-Chr1 6871234 6875755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0562 5 632 Receptor kinase-like Gene Family AT5G58300 60.890 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr1g0562 Pkinase 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0562 - - aprc:113868460 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1050 9 19859236 19863501 Apr1g0562 1 6871234 6875755 PCT