Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0556 ATGGAGAAGGAGTTGGTGGAATTGTACGACGCGGCCAAGAAGGCCGCGGATTCGTGCAGCTCCGGCGACGGCGAACACGATGAGAGCCGATGCATCGATGCGCTCGAGCAGCTTAGGAAATTTCCCGTCAATTATAAGATTCTCGTTAACACACAGGTGGGCAAACATCTTAAAGTTCTCACTAAACACCCAAGGCAGAAAATTCGGGCCTTTGCTACTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAATGGGGGCTGTGATAATAAGGTTGAGTCAGCAAATGGGGAGAGAGCTAAAGCTGGGAAAATGCAGAAGAGTCCTTCAGTGAAGGTTGAGAAAAGTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACATCAAAGTCAACCTTAGACAATATAAAGAAGGTACAAAATGTTGATGTCAAGACTGAGAAAACTGATCGTGCTGCAAGCATCAAGGTGGAAAAGCCGGTTTCTGGAGCTAAGAAAATATCATCCAGTTCTGCCATTCCCCCAAAGCTAAAAACTATGATTAAATCTAATGATTCAGTGCGAGACAAAATAAGGGAACTTCTCCAAGAGGCTTTAGCCAAGGTCTCTGGAGAGGCTGATGAAGATATGTTGGAAGAGGTTAATGCATGTGACCCTATTCGTGTTGCTGTGACAGTAGAGTCTGTATTATTTGAAAAGTGGGGTCCTTCAAATGGGGCCCAGAAGGTTAAGTATAGATCCTTAATGTTTAACCTTAAGGATCAAAATAACCCAGATTTCCGGAGAAAAGTTCTACTTGGTGTTGTTGAACCAGAGCGGTTGGTCAACATGAGCACAGCAGAAATGGCTAGTGAGCAGAGGAAGCAGGAGAATGAGAAAATTAAAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAACCCAACCAAAAGCAACAACCGATCAATTTAAGTGTGGCCGATGTGGGCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCCGATGAACCTATGACAACTTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1092 0.4322 MEKELVELYDAAKKAADSCSSGDGEHDESRCIDALEQLRKFPVNYKILVNTQVGKHLKVLTKHPRQKIRAFATDLIEIWKGIIIKETSKNKNGGCDNKVESANGERAKAGKMQKSPSVKVEKSETVKVEKIDRNGTSKSTLDNIKKVQNVDVKTEKTDRAASIKVEKPVSGAKKISSSSAIPPKLKTMIKSNDSVRDKIRELLQEALAKVSGEADEDMLEEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVVEPERLVNMSTAEMASEQRKQENEKIKEKALFECERGTQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0556 363 CDD TFIIS_I 9 83 - -
Apr1g0556 363 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Apr1g0556 363 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 95 IPR035441 -
Apr1g0556 363 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 94 IPR035441 -
Apr1g0556 363 Gene3D - 172 291 IPR036575 GO:0006351
Apr1g0556 363 SMART TFS2_5 8 85 IPR003617 GO:0005634
Apr1g0556 363 TIGRFAM TFSII: transcription elongation factor S-II 13 363 IPR006289 GO:0003676|GO:0005634|GO:0006368
Apr1g0556 363 Pfam Transcription factor S-II (TFIIS) 323 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Apr1g0556 363 Pfam Transcription factor S-II (TFIIS), central domain 192 309 IPR003618 GO:0006351
Apr1g0556 363 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Apr1g0556 363 Gene3D - 292 363 - -
Apr1g0556 363 SUPERFAMILY Zinc beta-ribbon 301 361 - -
Apr1g0556 363 MobiDBLite consensus disorder prediction 93 118 - -
Apr1g0556 363 PIRSF TFIIS 2 363 IPR035100 -
Apr1g0556 363 SMART Cys4_2 323 362 IPR001222 GO:0003676|GO:0006351|GO:0008270
Apr1g0556 363 CDD Zn-ribbon_TFIIS 316 362 - -
Apr1g0556 363 ProSiteProfiles Zinc finger TFIIS-type profile. 321 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Apr1g0556 363 SMART mid_6 193 301 IPR003618 GO:0006351
Apr1g0556 363 ProSiteProfiles TFIIS central domain profile. 195 318 IPR003618 GO:0006351
Apr1g0556 363 Coils Coil 185 205 - -
Apr1g0556 363 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 363 - -
Apr1g0556 363 SUPERFAMILY Elongation factor TFIIS domain 2 181 293 IPR036575 GO:0006351
Apr1g0556 363 ProSitePatterns Zinc finger TFIIS-type signature. 325 360 IPR001222 GO:0003676|GO:0006351|GO:0008270
Apr1g0556 363 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0556 Apr-Chr1 6781462 6785774 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr1g0556 TFIIS_M 9.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0556 K03145 - gmx:100811982 605.905