Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0555 ATGAGTATTTTTTTCCCACAAAGTGCCTCAGCCAAGAGGAAGAGGGTCATCAGAGAGCTTGTTCAGGGTCAGAAGGATGCTACTCAACTCAAGTTTCTGCTTCAGCAGCTTATTGGGCCTGATGGGTCTGTTTCAGCTATGGAACTTGCGACTAATGTGTTGAGATCTTTCGATGAAACTCTTTCTGTGTTGACTTCTTCTGAAGTTTCTGCTGGTAGTGCTGATGACGAGGTTGCTCAGAATCTTGTAGATTCTGGAGAAGCTGAGGTCGCAGCTTCTAGCATTGATCCGATGTCTGAGGATTCAAGTGAAAGTCGGAAGAGATCTTTGCCGGTTGCAAAAGATCGGAGAGGTTCCTACAAAAGAAGGAAGACTGAACAGACACGGACCATAGTCTCCCAAACAACTGATGATAACTATGCATGGAGAAAGTACGGTCAGAAGGAGATTCTAAATTCTCAATTTCCCAGGAGTTACTTCAGGTGCACTCGTAAGTATGATCAAGGTTGCCAAGCAACCAAACAGGTGCAACGGACACAAGAGAATCCTGATATGTATCATATCACGTACATTGGCTTTCACACATGCAAAGACACCCTCAAGGGTCCACAAATGGTGGCATATTCTGATACTTGGGACTCATTTCTTGTGAATTCCCATCCTGATTCAAACGTGCCAAATGAAGAGGATTCCCCTATTATCTCAAAAAGCCCAAACATAAAACGAGAAAATCCCAATGATGACACACTTAGTGATCTTACAGATGCTAACCTGTGGTCTGATTTGAAGGATATTGAAATATCCAATCCAAGCGTGCATCTGATAATGCAGACTGGTTCTCAATGCTTGCACATGGATTTTGGTTTCAGCACCGACTTCCACTTTGATGGAGGTCATTTGCTTTAG 906 0.4338 MSIFFPQSASAKRKRVIRELVQGQKDATQLKFLLQQLIGPDGSVSAMELATNVLRSFDETLSVLTSSEVSAGSADDEVAQNLVDSGEAEVAASSIDPMSEDSSESRKRSLPVAKDRRGSYKRRKTEQTRTIVSQTTDDNYAWRKYGQKEILNSQFPRSYFRCTRKYDQGCQATKQVQRTQENPDMYHITYIGFHTCKDTLKGPQMVAYSDTWDSFLVNSHPDSNVPNEEDSPIISKSPNIKRENPNDDTLSDLTDANLWSDLKDIEISNPSVHLIMQTGSQCLHMDFGFSTDFHFDGGHLL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0555 301 Gene3D WRKY domain 121 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0555 301 MobiDBLite consensus disorder prediction 89 130 - -
Apr1g0555 301 MobiDBLite consensus disorder prediction 100 128 - -
Apr1g0555 301 MobiDBLite consensus disorder prediction 220 240 - -
Apr1g0555 301 ProSiteProfiles WRKY domain profile. 137 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0555 301 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 7 269 - -
Apr1g0555 301 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0555 301 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0555 301 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 269 IPR044810 GO:0003700
Apr1g0555 301 MobiDBLite consensus disorder prediction 220 247 - -
Apr1g0555 301 SUPERFAMILY WRKY DNA-binding domain 133 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0555 Apr-Chr1 6755860 6758151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0555 11 246 WRKY Transcription Factor Family AT3G56400 44.167 3.04e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g0555 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0555 - - gmx:100170683 384.03