Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0552 ATGCGAGCGATATCCAACATGAGAGTTTTTGTTCTGTGCTTGTTCTCGTTGCTTTGTGTGGTAGTGACCGCATTGAACCCGTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCCGACATCCAAGATCCGAAGGGAAAGCTTGCATCTTGGAACGAAGATGATGAGAGTGCATGTGGGGGTGGTTGGGTTGGGGTGAAATGCAACCCTAGATCCAACAGGGTGGTGGAGCTTAACCTTGATGGGTTCTCTCTCTCTGGAAGAATAGGTAGAGGCTTGCAACGCTTGCAGTTTCTGCGTAAGCTTTCACTGGCTAACAACAACCTCACTGGGGGCATAAGCCTCAACATCGCTAGCATTGATAACCTTAGGGTCATTGACTTGAGTGGCAATAGTCTCTCAGGGGAAGTGCCTGATGATTTTTTCCGACAATGTGGGTCTCTTAGGAGTGTTTCCTTGGCAAGGAACAAGTTTTCTGGGAATGTTCCTTCTACTTTGGGGTCATGTTCTGCTCTTGCTTCGGTTGACCTTTCTCTTAACCAGTTTTCTGGTTCTGTGCCTCCTGTGGTTTGGTCTTTGAGTGCACTCAGGTCTCTGGATTTGTCTGGGAACTTGTTGGAGGGTGAGATTCCGAAAGAGGTTGAAGCGTTGAAGAACTTGCGGAGCATTAGCTTGGCGAGGAATCGGTTTTCTGGGACGGTTCCTGATGAATTTGGAAGCTGCTTGCTTTTGAGGTCTTTTGATTTGGGGGAGAATTCTTTTTCTGGCGGCATCCCTGGTGGTTTCAAGGAACTCTCCTTGTGTGGTTACCTTAGTTTGCGTGGAAATGCTTTCTCAGGAGAGATTCCTGAGTGGATTGGCGAGTTGAAAGCGCTTGAGACATTGGATCTCTCGAACAATAGATTTTCTGGCCAGGTGCCATACTCTATTGGAAATCTTCAGTCGTTGAAGATGTTGAATTTTTCAGCAAATGGTTTCACTGGTAATCTGCCAGAGTCTATGGCAAATTGCACAAGACTTTTGGCATTGGATGTTAGCCGGAATTCAATGTCTGGAGGTCTTCCAACATGGATTTTCAAATCAGATTTGGACAAGGTTTTGGTATCAGAGAACAGACCGAGTGGTAGCCTGAAAGGCCCTTTGTTTTCCTTGGCTGAAGTTGCGGTTCAAAGTCTTCAAGTTTTGGATTTGTCTCACAATACATTTTCTGGTGAAATCACGTCTGCTGTTGCAGGTTTAAGCAGCTTGCAGGTTTTGAATCTAGCAAATAACTCTCTTAAAGGTCCTATACCAGCTGCAATTGGTGAATTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTTGGGAAATAGGAGGAGCTGTGTCCTTGAAAGAACTGATATTGGAAAAGAACTTTCTTATTGGGAAAATTCCAACATCAGTTGAGAACTGCTCTTTGTTAACAACTTTGATTCTGTCCAAGAACTGGCTTAGTGGCCCAATACCTGCAGCAATTGCAAAACTTATCAACCTGCAATCTGTGGACTTGTCATTTAACAACCTTACTGGAAACCTTCCTAAGCAATTGGCCAACCTTCCCAATCTTCTTACCTTCAATTTGTCTCACAACAACCTTCAGGGTGAACTGCCGGCAGGTGGTTTTTTCAACACCATTTCTCCTTCCTCTGTTACTGGCAATCCATCCCTTTGTGGCTCTGCAGTGAACAAATCTTGCCCTGCCGTCCTCCCAAAGCCTATTGTCCTAAACCCCAACACTTCTACTGACTCTGGCCCGGGCTCATTGCCTCCAAATTTGGGCCATAAAAGAATCATCCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTAGCATTACTGTTCTCAATCTCCGTGTTCGGACCTCCACATCTCGATCTGCAGCTGCCCTTGCATTTTCTGCAGGGGATGAATTCAGCCATTCCCCAACCACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCAGGTGAGCCTGATTTTAGTTCTGGTGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGGTTTGGGGCAGTGTACCAAACAGTTCTTAGAGATGGACGTTCAGTTGCTATAAAGAAGCTCACTGTATCAAGTCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAGGTGAAGAAATTAGGAAAAGTCAGGCACCAAAATCTTGTGGAACTTGAGGGTTATTATTGGACTACATCACTGCAGCTCCTCATATATGAGTATGTCTCGGGTGGTAGTCTGTATAAGCATCTCCATGAAGGTTCAGGCGGAAACTTCCTCTCATGGAATGAGAGATTTAACGTCATTCTTGGGACAGCAAAGGCCTTAGCACACTTGCACCACTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTATTGATAGTTATGGTGAACCCAAAGTAGGTGATTTTGGTCTAGCAAGGCTGTTACCAATGCTAGATCGTTATGTCTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCACCTGAGTTTGCCTGCAAAACGGTGAAAATCACTGAGAAATGTGATGTATACGGGTTTGGAGTCTTGGTCTTGGAGATTGTTACAGGGAAGAGGCCTGTTGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGGGCTTTAGAAGAGGGCAGGGTTGAGGAATGTATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCTATTCCTGTGATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGGCCTGACATGGGCGAAGTGGTTAACATATTGGAGCTGATAAGATGTCCCTCAGAAGGACAAGAGGAGTTGGGATGA 2928 0.4488 MRAISNMRVFVLCLFSLLCVVVTALNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGGWVGVKCNPRSNRVVELNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGISLNIASIDNLRVIDLSGNSLSGEVPDDFFRQCGSLRSVSLARNKFSGNVPSTLGSCSALASVDLSLNQFSGSVPPVVWSLSALRSLDLSGNLLEGEIPKEVEALKNLRSISLARNRFSGTVPDEFGSCLLLRSFDLGENSFSGGIPGGFKELSLCGYLSLRGNAFSGEIPEWIGELKALETLDLSNNRFSGQVPYSIGNLQSLKMLNFSANGFTGNLPESMANCTRLLALDVSRNSMSGGLPTWIFKSDLDKVLVSENRPSGSLKGPLFSLAEVAVQSLQVLDLSHNTFSGEITSAVAGLSSLQVLNLANNSLKGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGAVSLKELILEKNFLIGKIPTSVENCSLLTTLILSKNWLSGPIPAAIAKLINLQSVDLSFNNLTGNLPKQLANLPNLLTFNLSHNNLQGELPAGGFFNTISPSSVTGNPSLCGSAVNKSCPAVLPKPIVLNPNTSTDSGPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRTSTSRSAAALAFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTTSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLIDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0552 975 CDD STKc_IRAK 698 964 - -
Apr1g0552 975 Gene3D Ribonuclease Inhibitor 291 584 IPR032675 -
Apr1g0552 975 Pfam Protein tyrosine and serine/threonine kinase 694 960 IPR001245 GO:0004672|GO:0006468
Apr1g0552 975 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Apr1g0552 975 SUPERFAMILY Protein kinase-like (PK-like) 696 959 IPR011009 -
Apr1g0552 975 Gene3D Transferase(Phosphotransferase) domain 1 769 973 - -
Apr1g0552 975 PRINTS Leucine-rich repeat signature 294 307 - -
Apr1g0552 975 PRINTS Leucine-rich repeat signature 415 428 - -
Apr1g0552 975 SMART LRR_typ_2 219 243 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 511 534 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 195 218 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 291 315 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 415 439 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 122 146 IPR003591 -
Apr1g0552 975 SMART LRR_typ_2 535 559 IPR003591 -
Apr1g0552 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 8 973 - -
Apr1g0552 975 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Apr1g0552 975 ProSiteProfiles Protein kinase domain profile. 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0552 975 Gene3D Ribonuclease Inhibitor 190 287 IPR032675 -
Apr1g0552 975 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Apr1g0552 975 Gene3D Phosphorylase Kinase; domain 1 686 768 - -
Apr1g0552 975 SUPERFAMILY L domain-like 60 369 - -
Apr1g0552 975 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 973 - -
Apr1g0552 975 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Apr1g0552 975 SUPERFAMILY L domain-like 260 609 - -
Apr1g0552 975 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515
Apr1g0552 975 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515
Apr1g0552 975 Pfam Leucine rich repeat 393 452 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0552 Apr-Chr1 6697069 6700936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0552 9 975 Receptor kinase-like Gene Family AT3G56370 68.589 0.0 1290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Apr1g0552 PK_Tyr_Ser-Thr 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0552 - - gmx:100791629 1689.47