Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0551 ATGGTGATTAAAGGAAATGAGAAGGATCCCAAGTCTGAACTACATCACACTTCAAATTCCAACACTCGATTGCTACTAGATTTCATGAAGCTTTCCAAGGATGAAACGGTTCGTGAACAATCAAGTAATGTAGTTGGTGATAGTGAAAGTGTAGATGATGAGAATACAAAGATAGAGGCAAAAACTTTTTCATGCAACTTTTGCAAGAGAGAGTTCTCTTCCTCACAAGCTTTAGGAGGGCACCAAAATGCACATAAACAAGAGCGTGCTTTGGCAAAACGTCGTCAAGGCCTTGAAGCTGGTGGGTTTGGGCACTTTCCCTGTTATCCTTACCCAACCCTTTATAACACTCATTCCTATTATGGAGGACCCTATAATAGGGCACTTGGAGTCCGAATGGACTCCATGATTCACAAGAATTCTTGGGCTTCACATGAATTTAGGAATGATCATATTTGGTCAAGGAAAGGCCAGGAAATACTTAATTCTTCACTGTTTGATCCAATTTTGAAGAAGGATGCAAGTCCAAGTTTAAGGGTAGAGGCTGATAATGGCACTAGAGAAACACTTTCCCTTTTTGAAATTATTGCTACCAATTCATCAAGCCAACTCATAAACCCAACTCTAGCAATCAAAGGTAGCGATGATCATCCCATACCAAAACAAACCTCCAAAGCAACATCTTTCAATCTTGATTTGTCACTTAAGCTTTGA 714 0.3978 MVIKGNEKDPKSELHHTSNSNTRLLLDFMKLSKDETVREQSSNVVGDSESVDDENTKIEAKTFSCNFCKREFSSSQALGGHQNAHKQERALAKRRQGLEAGGFGHFPCYPYPTLYNTHSYYGGPYNRALGVRMDSMIHKNSWASHEFRNDHIWSRKGQEILNSSLFDPILKKDASPSLRVEADNGTRETLSLFEIIATNSSSQLINPTLAIKGSDDHPIPKQTSKATSFNLDLSLKL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0551 237 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Apr1g0551 237 Gene3D Classic Zinc Finger 37 100 - -
Apr1g0551 237 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
Apr1g0551 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Apr1g0551 237 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 237 - -
Apr1g0551 237 PANTHER ZINC FINGER PROTEIN JAGGED 11 237 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0551 Apr-Chr1 6689479 6690192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0551 43 155 C2H2 Transcription Factor Family AT5G25160 43.089 1.70e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g0551 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0551 - - aprc:113850616 483.411