Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0550 ATGTCCTCCGACGACATCACTCTCGTTCCCGACCAGAGAATCGACAACGGTCTCAACTCTCCTCTCGTCTTCCAAGACGATCCCTTGCGCTTCAACTGCCCCGCCCCACAGCGCCGGGTCGGGGACCCGGGTCCCAAAACCCGCCAACTCGGCCCGTTCATCGACGACAAGATCTTCATCGACCGTGACCGCTTTTTCACCGCCCAAGGCCCAGAATTTCGCCGGAACAACGTCTACGCTGACTGCTCCGGTCGCCGGGACCCGCCGGACGCTCGGAATTGGAGCGGCAACGGCAGCGCCGCGACTCGTAGCGGCGACGAGTCCGACGACGACGAAGACGATGATGAAGATGACGATGACGACGATGACGAAGACGTTGAAGGCGACGCCGAAGTAGAAGGCCTCGTTGGTGATGGAAGCAAGCGCAGTTCCAGCGCAATGAATGATGCTAACAATAATAACAACGGTAGTGGTGGTGGTGTTAGCAATTTGCCTGTTGTGGCAAATGGGAAAGTTCAGCATCATTCCCCGTATGTTTCTGGTAGAGAGCTGTTGGGGAAGGATGGTGGTGATATTGGGCAATTGGTGCATAATAATGTGGGTGGTGGTGATGAAGATCATGAGCGAGAAGGGTTGGGAAAATCCCAGAATTCTGTCACCGTTGCAGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTACTGAAGGGTCTGCTTCAGTGCAGAAAGTTATGGTAGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTATGTATTCAAGCGAGTCCGGGGAGTCATTGAGGGCGATTCTTTCAGATCCTGTTACGGGAGCACTTATGGATGATGCGATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATACTGAATGTTATTAGAATGAAAGTTTGCTGCACGTGTTCTCAACCTACATCAGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATACCGTCGGGAAGAGGAGTCACAATTTTACCGGTCAGCCAAAAGAAGAAGAGAAAGACTTGATCAGGGTGGTTTTGGAGATTCAACTGTTATGGAACTACCAAGGAGTAGAGGCGTTCAGTTTCCTTTTGCCGTGATGGACAGGGTTATAATAAAGGGGAACAAAAGGACACCACAGCGCTTTGTAGGGCGAGAAGCTATTGTAACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGCTCCCTTGCCAAGGTTTCGGATGATCCTTCAAAACCTGCCTCCAGCAAGATGGCACCTAATTGGGTTTAG 1350 0.5037 MSSDDITLVPDQRIDNGLNSPLVFQDDPLRFNCPAPQRRVGDPGPKTRQLGPFIDDKIFIDRDRFFTAQGPEFRRNNVYADCSGRRDPPDARNWSGNGSAATRSGDESDDDEDDDEDDDDDDDEDVEGDAEVEGLVGDGSKRSSSAMNDANNNNNGSGGGVSNLPVVANGKVQHHSPYVSGRELLGKDGGDIGQLVHNNVGGGDEDHEREGLGKSQNSVTVAETDCEEYYSHYLQGTEGSASVQKVMVDDNGCGFSGRKDVMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGILNVIRMKVCCTCSQPTSEESISPNLSLRAAVQAYRREEESQFYRSAKRRRERLDQGGFGDSTVMELPRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKMAPNWV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0550 449 SUPERFAMILY RING/U-box 269 342 - -
Apr1g0550 449 ProSiteProfiles U-box domain profile. 270 342 IPR003613 GO:0004842|GO:0016567
Apr1g0550 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 56 448 - -
Apr1g0550 449 MobiDBLite consensus disorder prediction 33 52 - -
Apr1g0550 449 MobiDBLite consensus disorder prediction 106 132 - -
Apr1g0550 449 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g0550 449 MobiDBLite consensus disorder prediction 78 166 - -
Apr1g0550 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 56 448 - -
Apr1g0550 449 MobiDBLite consensus disorder prediction 141 162 - -
Apr1g0550 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 340 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0550 Apr-Chr1 6681411 6685459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0550 215 449 Plant U-box Gene Family AT5G05230 59.504 4.92e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0550 - - adu:107470194 658.292