Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g0547 | ATGGCTCTTCATTACAGTCCCCACCGCTTGTTGCTTGACACAGATTCAAGCTCAACTACACCAGGTAACATGAACAAGACAAGAGAGTCTTTCACAGGTGAGGCAAATTTTGACACCAACATGGTGATTATCTTGGCAGCGTTGCTTTGTGCACTTATATGTGCTTTAGGACTCAACTCAATTGTCCGTTGTGCTCTAAGATGTAGCCGCAGATTTGCTTTTGAGACACCAGAAGAGGCTGCAGCACGGTTAGCAGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGCTGTTTATGGTTCAGGAGACAGTACTAGTATTGTAGCCACAGATTGTCCAATTTGCCTTGGTGAGTTTGTGGATGGGGAGAAAGTTAGAGTGCTACCAAAATGTAACCATAGATTCCATGTAAGGTGCATAGATACATGGCTGCTCTCACACTCATCTTGTCCTACTTGCAGACAGTCTTTGCTTGAGCAGCCAACCATTTCTAGAGCTTCAACCCTGACTGTAGCTGTGGCTGCAGCTGGAGGAACCAGTCACCACCATGTAGAGAATGGCTTAGGAGGGCATGAACATGAGTCTTTAGCTGTGGCTGTGGAAGAGGTTGGCTAG | 624 | 0.4615 | MALHYSPHRLLLDTDSSSTTPGNMNKTRESFTGEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEEAAARLAAKGLKKSALHQIPIAVYGSGDSTSIVATDCPICLGEFVDGEKVRVLPKCNHRFHVRCIDTWLLSHSSCPTCRQSLLEQPTISRASTLTVAVAAAGGTSHHHVENGLGGHEHESLAVAVEEVG* | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g0547 | 207 | Pfam | Ring finger domain | 114 | 157 | IPR001841 | - | |
Apr1g0547 | 207 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 8 | 176 | - | - | |
Apr1g0547 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - | |
Apr1g0547 | 207 | SMART | FANCL_C_2 | 111 | 169 | - | - | |
Apr1g0547 | 207 | CDD | RING-H2_PA-TM-RING | 114 | 157 | - | - | |
Apr1g0547 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 162 | IPR013083 | - | |
Apr1g0547 | 207 | SMART | ring_2 | 115 | 156 | IPR001841 | - | |
Apr1g0547 | 207 | SUPERFAMILY | RING/U-box | 114 | 165 | - | - | |
Apr1g0547 | 207 | PANTHER | RING-H2 FINGER PROTEIN ATL74 | 8 | 176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g0547 | Apr-Chr1 | 6655677 | 6657267 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g0547 | 9 | 165 | C3H Transcription Factor Family | AT3G10910 | 61.446 | 5.43e-61 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g0547 | - | K19040 | gmx:100808245 | 299.671 |