Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0547 ATGGCTCTTCATTACAGTCCCCACCGCTTGTTGCTTGACACAGATTCAAGCTCAACTACACCAGGTAACATGAACAAGACAAGAGAGTCTTTCACAGGTGAGGCAAATTTTGACACCAACATGGTGATTATCTTGGCAGCGTTGCTTTGTGCACTTATATGTGCTTTAGGACTCAACTCAATTGTCCGTTGTGCTCTAAGATGTAGCCGCAGATTTGCTTTTGAGACACCAGAAGAGGCTGCAGCACGGTTAGCAGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGCTGTTTATGGTTCAGGAGACAGTACTAGTATTGTAGCCACAGATTGTCCAATTTGCCTTGGTGAGTTTGTGGATGGGGAGAAAGTTAGAGTGCTACCAAAATGTAACCATAGATTCCATGTAAGGTGCATAGATACATGGCTGCTCTCACACTCATCTTGTCCTACTTGCAGACAGTCTTTGCTTGAGCAGCCAACCATTTCTAGAGCTTCAACCCTGACTGTAGCTGTGGCTGCAGCTGGAGGAACCAGTCACCACCATGTAGAGAATGGCTTAGGAGGGCATGAACATGAGTCTTTAGCTGTGGCTGTGGAAGAGGTTGGCTAG 624 0.4615 MALHYSPHRLLLDTDSSSTTPGNMNKTRESFTGEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEEAAARLAAKGLKKSALHQIPIAVYGSGDSTSIVATDCPICLGEFVDGEKVRVLPKCNHRFHVRCIDTWLLSHSSCPTCRQSLLEQPTISRASTLTVAVAAAGGTSHHHVENGLGGHEHESLAVAVEEVG* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0547 207 Pfam Ring finger domain 114 157 IPR001841 -
Apr1g0547 207 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 176 - -
Apr1g0547 207 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Apr1g0547 207 SMART FANCL_C_2 111 169 - -
Apr1g0547 207 CDD RING-H2_PA-TM-RING 114 157 - -
Apr1g0547 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Apr1g0547 207 SMART ring_2 115 156 IPR001841 -
Apr1g0547 207 SUPERFAMILY RING/U-box 114 165 - -
Apr1g0547 207 PANTHER RING-H2 FINGER PROTEIN ATL74 8 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0547 Apr-Chr1 6655677 6657267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0547 9 165 C3H Transcription Factor Family AT3G10910 61.446 5.43e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0547 - K19040 gmx:100808245 299.671