Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0546 ATGTCGTTTTCACACCACCGGCGATCTCAATCGGAGGTACATTTCCGGATCCCCGACGACTTCGACCTCGAAGTGGATCCATTGGAAGTGCCTCCGCTCCATTCCCAAGATCCAGCCCCACACGATGACCTTCTCTCTGCCTACGTCGATTCCAACAATATCGAATCCATTTCCAAACCCGAACCCTCCTCCACCGCTCGCCACGGTCACCGTCGCAGTAATTCCGACGATGCCTCCTTAATGGAGGGCATTGAGGCCAAGAAGGCCATGTCCCCCGATAAACTCGCTGAATTGTGGACCGTCGATCCTAAACGAGCCAAGAGGATTCTCGCCAACCGCCAATCTGCCGCACGCTCTAAAGAGAGAAAAGCTTGTTATGTGTTGGAGCTCGAAAGAAAAATTCAAACTCTTCAAACAGAAGCCACCACTCTTTCTGCTCAATTGAATCTTTTCCAGAGAGACACATCTGGTCTGACTACTGAAAATACAGAGTTAAAGCTTAGGTTACAAACCATGGAGCAACAAGCTAAGTTATGTGACGTTCTAAATGAAGCACTGAAGAAAGAAGTTGAAAGGCTCAGGATTGCAACTGGAGAGATAGTAATTCATGCAGATATGTATGGTTCAGGAATGCATCAACATCCATATTCTCAGGCTTCGTTCTTCTCACATCACTCACAACATGGGCTGAGCGAACATCAGACCATACAAATGCCGCAGTTGCATTCATTCTCATCTAATGTGTCTACTTCCCATGGGCCTCTGTTTGATCTAGCCACTCCATATGATTTGTCAGAAATGTTATCGAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATAGGCCACAGGGTTTCTCATGTTATGATGCCAGATGGTCCAACAATATCTGTGAATAAAATCAACAATGCCTGA 915 0.4667 MSFSHHRRSQSEVHFRIPDDFDLEVDPLEVPPLHSQDPAPHDDLLSAYVDSNNIESISKPEPSSTARHGHRRSNSDDASLMEGIEAKKAMSPDKLAELWTVDPKRAKRILANRQSAARSKERKACYVLELERKIQTLQTEATTLSAQLNLFQRDTSGLTTENTELKLRLQTMEQQAKLCDVLNEALKKEVERLRIATGEIVIHADMYGSGMHQHPYSQASFFSHHSQHGLSEHQTIQMPQLHSFSSNVSTSHGPLFDLATPYDLSEMLSSDSIGQFQGLDIGHRVSHVMMPDGPTISVNKINNA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0546 304 SUPERFAMILY Leucine zipper domain 104 158 IPR046347 GO:0003700|GO:0006355
Apr1g0546 304 MobiDBLite consensus disorder prediction 55 79 - -
Apr1g0546 304 CDD bZIP_plant_RF2 105 154 IPR044759 GO:0003700|GO:0006355
Apr1g0546 304 Coils Coil 127 154 - -
Apr1g0546 304 MobiDBLite consensus disorder prediction 64 79 - -
Apr1g0546 304 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 165 IPR004827 GO:0003700|GO:0006355
Apr1g0546 304 SMART brlzneu 100 164 IPR004827 GO:0003700|GO:0006355
Apr1g0546 304 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 301 - -
Apr1g0546 304 Pfam bZIP transcription factor 104 161 IPR004827 GO:0003700|GO:0006355
Apr1g0546 304 PANTHER BZIP TRANSCRIPTION FACTOR 18 2 301 - -
Apr1g0546 304 MobiDBLite consensus disorder prediction 26 45 - -
Apr1g0546 304 Gene3D - 104 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0546 Apr-Chr1 6649777 6652765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0546 5 281 bZIP Transcription Factor Family AT2G40620 49.226 8.68e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr1g0546 bZIP_1 4e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0546 - - gmx:100807712 399.823