Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0545 ATGGCAATTGCAGCCATCTCTCTTCTTTTCTTTCTTCTTAATCTATGCCTCCAAGGTACTTTTGGTGACTATGGAGGAGGATGGCAAAGTGGTCATGCCACATTTTATGGTGGGGGAGATGCATCGGGCACAATGGGAGGGGCTTGTGGTTATGGTAACTTGTATAGCCAAGGCTATGGTACTAACACTGCAGCACTTAGCACTGCTCTATTCAACAATGGTTTAAGTTGTGGGTCTTGCTATGAGATGAAATGTGACACTGACCCCAAATGGTGCCTCCCCGGTAGCATAATCGTTACTGCCACAAACTTTTGCCCACCTAACTATGCATTGTCTAATTCCAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTTGATCTTGCTGAGCCTGCTTTCTTGCAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTCTCATGTGCAAAGAAAGGAGGAATCAGGTTCACAATCAATGGCCACTCTTACTTTAACTTGGTTCTGATCACAAATGTTGGTGGAGCTGGAGATATTCATTCTGTGTCCATCAAAGGGTCTAGAACTGGGTGGCAAACCATGTCTAGAAACTGGGGGCAGAATTGGCAAAGCAATTCATACCTCAATGGTCAAAGCCTCTCTTTTCAGGTCACTACCAGTGATGGCAGGACTATCACTAGCAACAACGTTGTACCTGCAAACTGGCAATTTGGACAGACTTATGAGGGGTCACAATTTTAG 753 0.4489 MAIAAISLLFFLLNLCLQGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDTDPKWCLPGSIIVTATNFCPPNYALSNSNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCAKKGGIRFTINGHSYFNLVLITNVGGAGDIHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSNNVVPANWQFGQTYEGSQF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0545 250 Gene3D - 18 154 IPR036908 -
Apr1g0545 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Apr1g0545 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Apr1g0545 250 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Apr1g0545 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Apr1g0545 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Apr1g0545 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Apr1g0545 250 Pfam Lytic transglycolase 63 148 IPR009009 -
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Apr1g0545 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Apr1g0545 250 SMART dpbb_1 63 148 IPR007112 -
Apr1g0545 250 PANTHER EXPANSIN-A15 3 250 IPR002963 GO:0009664
Apr1g0545 250 Gene3D - 156 250 IPR036749 -
Apr1g0545 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Apr1g0545 250 PANTHER EXPANSIN 3 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0545 Apr-Chr1 6640975 6642417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0545 3 250 Expansin Gene Family AT2G40610 81.526 7.91e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0545 - K20628 gmx:547673 495.352