Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0532 ATGGGAACAGTTAGTAGCATTGGCTTCCCTTCAGTATTCAGAGTTCCTGTGCATACGCAACCGTTTTCAAAGCAGATGAAGATGAATAAATCAGCATGCGGTTTTGTGGTTCCTCTTAAATACTCTGTTACGCGGAGTCAAATCTGTTGTAAATTATCAGAAAGTGGGATTGAGGAGAACCCCACAAGCAAGAAGGCCTCAAAATCCAAGGACAGAATGGAGGACTACAATTTAGCTATGAAGAGGATGATGAGGAACCCTTACGAGTATCATCACGATCTGGGTATGAATTACACACTGATTACTGACTATTTGGTTGTGGGCTCTCAACCACAGAAACCCGATGACATAGATCACCTGAAAAAGGAAGAGGGTGTGGCATACATTCTTAACTTGCAACAAGATAAGGATATTGAATATTGGGGAATAGACTTGCAGTCAATAATACGAAGGTGTGGTGAACTCGAAATTAGCCACATGATGAGACCGGCAAAAGACTTTGATCCTGATTCCTTGCGAAGTGAACTACCTAAAGCGGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCAGTGGCAATTGCTTATTTATTCTGGTTTTGTGACATGAATTTAAATACAGCATATGATATGCTAACTTCAAAAAGACCTTGTGGGCCAAATAAAAGGGCAATTCGTGGAGCTACTTATGATTTGGCCAAGAATGATCCATGGAAAGAGCCATTTGAGAGTCTTCCAGAACATGCATTTGAGGATATAGCAGACTGGGAAAGGAGCTTGATTCAAAATCGTGTCCGATCCCTTCGTGCAACTTGA 864 0.419 MGTVSSIGFPSVFRVPVHTQPFSKQMKMNKSACGFVVPLKYSVTRSQICCKLSESGIEENPTSKKASKSKDRMEDYNLAMKRMMRNPYEYHHDLGMNYTLITDYLVVGSQPQKPDDIDHLKKEEGVAYILNLQQDKDIEYWGIDLQSIIRRCGELEISHMMRPAKDFDPDSLRSELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNTAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFESLPEHAFEDIADWERSLIQNRVRSLRAT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0532 287 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203|GO:0046838
Apr1g0532 287 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 7 286 - -
Apr1g0532 287 Gene3D Protein tyrosine phosphatase superfamily 80 287 IPR029021 -
Apr1g0532 287 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 233 IPR000387 GO:0016311|GO:0016791
Apr1g0532 287 Pfam Dual specificity phosphatase, catalytic domain 118 237 IPR000340 GO:0008138|GO:0016311
Apr1g0532 287 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
Apr1g0532 287 SMART dsp_5 97 247 IPR020422 GO:0006470|GO:0008138
Apr1g0532 287 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 239 IPR029021 -
Apr1g0532 287 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 7 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0532 Apr-Chr1 6514636 6516810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0532 4 287 Protein tyrosine phosphatase (PTP) family AT3G10940 70.280 8.02e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0532 - - gmx:100787079 493.041