Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0512 ATGGCGCCGAAGCAGGGAAGAGCGAGGGTTAGCAGAAACCCAGAATTGATAAGGGGAATTGGAAAATACTCAAGATCTCAGATGTACCATAAGAGGGGTCTCTGGGCCATCAAGGCCAAGAACGGTGGCTCTTTCCCTCGCCACGATCCCAATCCCAAGCCTCAAGCACCCCCTCAGAAACCCCCTAAGTTCTACCCTGCTGAAGATGTCAAGAAGCCTCTTCTCAACAAGCACAAGCCCAAAGCTACCAAGCTCAGGGCCAGCATTACTGCCGGGACTGTGCTGATTCTTCTTGCCGGCAGATTTAAGGGAAAGAGAGTAGTGTTTCTTAAGCAGCTTCCTTCTGGGTTGCTTCTCGTAACCGGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGCGTGAATCAGTCGTATGTTATTGGCACATCAACCAAAGTAGATGTTTCTGCAGTTAATGTGGATAAATTTGACGACAAGTACTTTTCAAAGGAAGTCCAGAAAAAGACAAAGAAGGGAGAAGGGGAGTTCTTTGAGGCAGAAAAGGAGGAGAAAAATGTGCTCCCCCAACAAAAGAAAGATGACCAAAAGACTGTGGATTCCGCATTGATAAAAGCAATCGAGAGTGTTCCAGACTTGGTGGTTTACCTAGGTGCCAGGTTTTCCTTGAAGGCAGGGGTGAAGCCTCACGAGCTAGTCTTCTAG 702 0.4758 MAPKQGRARVSRNPELIRGIGKYSRSQMYHKRGLWAIKAKNGGSFPRHDPNPKPQAPPQKPPKFYPAEDVKKPLLNKHKPKATKLRASITAGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEVQKKTKKGEGEFFEAEKEEKNVLPQQKKDDQKTVDSALIKAIESVPDLVVYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0512 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Apr1g0512 233 MobiDBLite consensus disorder prediction 40 67 - -
Apr1g0512 233 CDD KOW_RPL6 81 233 IPR041997 -
Apr1g0512 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Apr1g0512 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Apr1g0512 233 Gene3D - 87 173 IPR014722 -
Apr1g0512 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Apr1g0512 233 SUPERFAMILY Translation proteins SH3-like domain 87 178 IPR008991 -
Apr1g0512 233 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0512 Apr-Chr1 6283672 6285658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0512 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.970 2.57e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0512 K02934 - gmx:100499766 376.711