Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0509 ATGGACTTAGCCGCAAAGCTTCATCACCTCGACCTCACCGCGCCAGTCATTTTAGACGCGCCGAAGCCCTCCATACTCCGCCACTTTCCGCCGCGCACACTCACCAGAGTGAACATCAACACCAATTTAATTTACACCAATCGATTCTTGGGCCCACTAAGGCCCAATTCCACTTCCAATGCTTCATCGGGCCTATCCACCGTCACCGTCGAGGACGACATCGAGTCTCTCTTTTCTGAGCCTTCTACGGTCGACGAACGGCGCGTGAGGAAGCAGCCGAACACGGGCGCGTCGAGTGTTTCATCGGGCGTGAAGTTAGAAAACGTGAGCAAAACGTACAAGGGTGTGACTGTGTTGAAGGACGTGAGTTGGGAAGTGAAGAAGGGTGAGAAAGTGGGTTTAGTTGGGGTGAACGGTGCGGGTAAGACGACCCAGATGAGGATTATTGCGGGTCTGGAGGAACCGGATTCGGGGAACGTGATAAAAGCGAAGCCGAACATGAAAATCGCGTTTCTAAACCAGGAATTTGAGGTGTCGTTGAGTAGGACGGTGAGGGAGGAGTTTATGAGCGCGTTTAAGGAGGAAATGGAGGTGGCGAGCAAGTTGGAGAAGGTGCAGAAGGCACTTGAAGGTGCTGTTAACGATTTGGAGTTAATGGGAAGGCTTTTGGATGAGTTTGATTTACTTCAGAGGAGGGCACAATCTGTGGACTTGGATGAGGTTGATGCAAAGATAAATAAATTGGTACCAGAACTTGGTTTTGCTCCTGAGGATTCTGATAGGTTGGTCGCGTCTTTTAGTGGAGGTTGGCAAATGAGAATGTGTCTTGGCAAGATTCTACTTCAGGAGCCTGATTTATTACTGTTAGATGAGCCCACAAATCACCTTGACCTCGACACCATTGAGTGGCTTGAAGACTATCTTAACAAGCAGGATGTGCCGATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTTGAAACTGAGATGGGTGTATCCAGGACATATGAGGGGAATTATTCAGAGTTTGTAATTTCAAAGGCAGCATGGATTGAGGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAAAGACTTGATAAGTAGGTTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAAAAGAAGCTGGAGAGACTGCAGGAAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAGCAAATGAAAATCAGGTTCCCTGAGCGCGGAAGGAGTGGAAGATCTGTCGTAACAATTAAGAACTTGGGATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTAGAGAAGCCAAGTGGGGGTGAAGTTTTGCTTGGAGAGCATAATGTATTGCCTAACTATTTTGAGCAAAATCAGGCTGAAGCACTTGATCTGGACAAGACAGTGATTCAGACAGTAGAAGAAGCTGCAGAGGACTGGAGGATTGATGACATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCACTTTTGAGTGGTGGTGAGAAGGCTCGACTAGCTTTCTGCAAATTCATGGTAAAACCATCGACTCTGCTTGTGTTGGACGAACCAACCAACCACTTGGATATACCTTCAAAAGAAATGCTCGAGGAGGCAATAACTGAGTACCAGGGCACTGTTATCACAGTATCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAAAGATGGCACTTTACAGGATTATGCAGGTGGTTACAATTATTATTTAGAGAAGAATCTCGATGCTAGGGAAAGAGAACTTGAACGCGAGGCAGAGCTAGAGGGCAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGTGCGAAAAATGCTAAGAGATGGAATTGA 2097 0.4511 MDLAAKLHHLDLTAPVILDAPKPSILRHFPPRTLTRVNINTNLIYTNRFLGPLRPNSTSNASSGLSTVTVEDDIESLFSEPSTVDERRVRKQPNTGASSVSSGVKLENVSKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVASKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSEFVISKAAWIEAQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVTIKNLGFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPSGGEVLLGEHNVLPNYFEQNQAEALDLDKTVIQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYQGTVITVSHDRYFIKQIVNRVIEIKDGTLQDYAGGYNYYLEKNLDARERELEREAELEGKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNAKRWN* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0509 698 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524
Apr1g0509 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 431 646 IPR003439 GO:0005524
Apr1g0509 698 Coils Coil 658 687 - -
Apr1g0509 698 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 46 688 - -
Apr1g0509 698 CDD ABCF_EF-3 104 334 - -
Apr1g0509 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 636 IPR027417 -
Apr1g0509 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 348 IPR027417 -
Apr1g0509 698 MobiDBLite consensus disorder prediction 648 678 - -
Apr1g0509 698 MobiDBLite consensus disorder prediction 82 103 - -
Apr1g0509 698 Gene3D - 100 385 IPR027417 -
Apr1g0509 698 Pfam ABC transporter 447 578 IPR003439 GO:0005524
Apr1g0509 698 Pfam ABC transporter 119 294 IPR003439 GO:0005524
Apr1g0509 698 MobiDBLite consensus disorder prediction 648 698 - -
Apr1g0509 698 ProSitePatterns ABC transporters family signature. 266 280 IPR017871 GO:0005524
Apr1g0509 698 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 46 688 - -
Apr1g0509 698 SMART AAA_5 455 623 IPR003593 -
Apr1g0509 698 SMART AAA_5 128 344 IPR003593 -
Apr1g0509 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 104 362 IPR003439 GO:0005524
Apr1g0509 698 Gene3D - 393 660 IPR027417 -
Apr1g0509 698 Pfam ABC transporter 333 420 IPR032781 -
Apr1g0509 698 CDD ABCF_EF-3 431 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0509 Apr-Chr1 6257936 6263458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0509 428 648 Calmodulin-binding Proteins AT2G36910 25.911 2.93e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0509 - - gmx:100796907 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0509 1 6257936 6263458 Apr1g0509 1 6257936 6263458 ECH