Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0506 ATGGATTACTATTTTGGAAACCCTAATCCGAACCCTTGTAACCGTCACTCTGCCGTATTAAATATGGCTTCTCCCTTCTCCGAGTTCATGTTATCTGATTATCTCATGCTCGATGATGTTGTTGATCATCAAGAGTCTTGGTCCCAAAGTACAGAAACTGAATCATCCGAGAAAGCAGCTTCCAGCGATGCCAGACACGGTGATGCAACCTCCACCACCACCAACATGCAAGTAAAATGCAAAAATAGTGGGATTAGGCGAAAGAAGGTAGAAGTTAGCCAAAGGGTCACGTTTAGGACCAGATCGCAGCTTGAGAATATGGATGATGGATATAAGTGGAGGAAATACGGCAAGAAGTCAGTGAAGAACACTCCATACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGAAAGGGATAGGGAAGATTCAAGCTATGTGTTAACGACATATGATGGTGTGCACAATCATGAGACCCCCAGTACTGCGTACTACAGCCAAATGTCCTTGATGCATTCTAGTGATTGGGCGCTGCAGCCTTCTGTAAACTCATCCTCTATTTCCTAG 588 0.4456 MDYYFGNPNPNPCNRHSAVLNMASPFSEFMLSDYLMLDDVVDHQESWSQSTETESSEKAASSDARHGDATSTTTNMQVKCKNSGIRRKKVEVSQRVTFRTRSQLENMDDGYKWRKYGKKSVKNTPYPRNYYKCSGEGCDVKKRVERDREDSSYVLTTYDGVHNHETPSTAYYSQMSLMHSSDWALQPSVNSSSIS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0506 195 MobiDBLite consensus disorder prediction 46 77 - -
Apr1g0506 195 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0506 195 SUPERFAMILY WRKY DNA-binding domain 99 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0506 195 SMART WRKY_cls 107 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0506 195 ProSiteProfiles WRKY domain profile. 102 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0506 195 Gene3D WRKY domain 91 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0506 195 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 10 172 - -
Apr1g0506 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 172 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0506 Apr-Chr1 6240820 6242880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0506 9 182 WRKY Transcription Factor Family AT5G64810 44.134 7.16e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g0506 WRKY 1.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0506 - - gmx:100127396 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0506 1 6240820 6242880 Apr1g0506 1 6240820 6242880 ECH
Apr9g0166 9 2190984 2196805 Apr1g0506 1 6240820 6242880 PCT