Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0503 ATGATGTCAACAACGTCCCAAACTATTGTTAACCATAGTTTGTTCGAAGAGCAAGATCCGAATCCTACGCAGATGGGGTTCATTCCTTTCCCACCAAACCTAACCTTTCCTCTTTTGGGTTGCCATCAATCTTTGAAAACCATCAGTGCAATAGCTCCTTCACTTTCATCTGAAGCTGCTGCTTCTACTGCAAATTTTGCGGAAACCCTATTCTCAACCGCTGTTCAAAGACCACGAGAAGATCTCACTTCAAGTTTGGGAGGAGGAGGAGGAGGAGTAGGAGGAGGTCAACTCTTTTCCATGAACAGATCGAGAGTGAATTCATGGGCATGGGGAGAAGTAACGGATTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATCAAGGCAAGAAGGAAGGTTAGGGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGAAAGTACGGGCAGAAAGTGGTAAAGAACACGCAGCACCCGAGAAGCTATTACCGTTGCACCCAAGATAACTGTCGAGTAAAGAAGCGCGTGGAGCGCTTGGCTGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTCCACTCTCCATCAACTGATCTTGATGACTCACAAACTCCGTCTGAACTTGGCAACTTCTTGTGGTAG 720 0.4583 MMSTTSQTIVNHSLFEEQDPNPTQMGFIPFPPNLTFPLLGCHQSLKTISAIAPSLSSEAAASTANFAETLFSTAVQRPREDLTSSLGGGGGGVGGGQLFSMNRSRVNSWAWGEVTDCLMGKRIGGDDNHLGVSAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSTDLDDSQTPSELGNFLW* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0503 239 Gene3D WRKY domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0503 239 Pfam WRKY DNA -binding domain 163 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0503 239 SUPERFAMILY WRKY DNA-binding domain 154 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0503 239 MobiDBLite consensus disorder prediction 224 239 - -
Apr1g0503 239 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0503 239 MobiDBLite consensus disorder prediction 218 239 - -
Apr1g0503 239 SMART WRKY_cls 162 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0503 239 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 61 228 - -
Apr1g0503 239 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 228 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0503 Apr-Chr1 6187910 6191216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0503 132 239 WRKY Transcription Factor Family AT4G39410 78.761 9.18e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g0503 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0503 - - gmx:100127389 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0503 1 6187910 6191216 Apr1g0503 1 6187910 6191216 ECH