Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0500 ATGGCAAGAGAGATCATGATATTGCAGAAGCTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTTCATGCAATCGGATCTGACCAAGATTATCACCCGACCCGGGGAGAAACTCACCGATCCACAGATCAAGTGCTTTATGCAGCAGCTGCTTTCTGGGCTCCAGCACTGTCATGAGAGGGGAGTTATGCACCGAGATATCAAAGCTTCAAACTTGTTAATAGACAAAAGAGGGGTGTTGAAAATTGCGGATTTTGGGCTTGCAAATTCAATTGATGCTGAAAGGCCCCTTACAAATAGAGTGGTGACCCTTTGGTATAGAGCACCAGAACTTCTTTTAGGTTCAACCGATTATGGAATTGGCATTGATCTCTGGAGTGTAGGATGCCTGTTGGCTGAGATGTTTGTCGGAAGACCAATTATGCCTGGCAGAACAGAGGTGGAACAGCTTCACATGATCTTCAAACTATTTGGTGCACCTTCAGAGGATTACTTTAGAAAACTGAAGCTAACAACAAGCTACCGGGCCCCACAACCTTACAAACCTATTTACCAAGAAAGCTTCCAGAAGTTTCCTTCCTCTTCAAATGGTCTTTTGACTAAACTTCTTGATCTCGACCCTGCAAATCGTGGCAGCGCTGCCTCTGCTCTCCAAAGTGAATTCTTCAAATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAATCAACAAAGAAGAGGATGAACGCTCCCAAACCAAGAGACGCAGAAGGCATAGGGTTTCTAAAAGAGGGCAACCATCTCAAACAAGGAAAAGTGATGCTAGTCAGTCAGGAAAGAATCAAACTACCGAACAACCTGGTAGAGATACAGAATCGTCAAAAGAGAAGAAGAATTTGGAAAAACTGCAGAAGCAAAGTCATGATACGGGCAATAGTGGTAGCAGCACATCATTGGGCTCAAGAATGTTTATGAATGCATCTCTGTCCCCAGTTTTTCTCTCTAGTGGGACAAAATCCCCCAAATCAGATGGCCATCCCAATGCTCTTAAGAACATAAAGAACTATAGTGTTCTCTTACAGGCCTCTATGATAGATATGATCAACCGCAATGAAGGCAACGAATTTGCTCAGCTTCGTAGGTCCTTTTCCACGTTGGATTTTCGACTTGATCCACACAAGCTATCAAACCTTTATGGCTCACCTAAAAATATTTAA 1245 0.4289 MAREIMILQKLDHPNVIKLEGLATSRMQYSLYLVFDFMQSDLTKIITRPGEKLTDPQIKCFMQQLLSGLQHCHERGVMHRDIKASNLLIDKRGVLKIADFGLANSIDAERPLTNRVVTLWYRAPELLLGSTDYGIGIDLWSVGCLLAEMFVGRPIMPGRTEVEQLHMIFKLFGAPSEDYFRKLKLTTSYRAPQPYKPIYQESFQKFPSSSNGLLTKLLDLDPANRGSAASALQSEFFKCSPLACDPSALPVINKEEDERSQTKRRRRHRVSKRGQPSQTRKSDASQSGKNQTTEQPGRDTESSKEKKNLEKLQKQSHDTGNSGSSTSLGSRMFMNASLSPVFLSSGTKSPKSDGHPNALKNIKNYSVLLQASMIDMINRNEGNEFAQLRRSFSTLDFRLDPHKLSNLYGSPKNI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0500 414 SUPERFAMILY Protein kinase-like (PK-like) 2 240 IPR011009 -
Apr1g0500 414 MobiDBLite consensus disorder prediction 253 330 - -
Apr1g0500 414 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0500 414 PANTHER CYCLIN-DEPENDENT KINASE 1 364 - -
Apr1g0500 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Apr1g0500 414 Pfam Protein kinase domain 2 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0500 414 SMART serkin_6 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0500 414 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Apr1g0500 414 Gene3D Transferase(Phosphotransferase) domain 1 45 277 - -
Apr1g0500 414 PANTHER CELL DIVISION PROTEIN KINASE 1 364 - -
Apr1g0500 414 MobiDBLite consensus disorder prediction 315 330 - -
Apr1g0500 414 MobiDBLite consensus disorder prediction 277 297 - -
Apr1g0500 414 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0500 Apr-Chr1 6131929 6135167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0500 3 269 Core Cell Cycle Gene Families AT5G10270 47.552 1.60e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr1g0500 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0500 K08819 - gmx:100782603 603.208