Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0494 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAAGAGCAAGAGGACAAAGACTCGAGCAAGAAGAAGAAGGAGAGCAGCGACAAGACCGAAAGGAGCTACAGAAAGCGCGAGGAGATCGACGATGCCACCGAAGAAAGGAAGAGCAAGAGGTCCAGAGGCGACGACGAGAATGGCTCCAAGAAGGATAAGGATCGCGATGACCGCGACAAGGACCGCCATAAGAGTAGCAGAGACAGAGACAGAGATAAAGACGGTGAGAGAAGTAGCAGAGTCAGGGATAGAGAGAAGGAGAGAGACAAAGAGAGGGATCGGAGAGAGAAGGACAAGGAGAGGGATAGGAGAGAAAGGGACAGAGACAGAGAGAGAACGGAGAGAGAACGAGAACGAGAGGAGAAAGAGAGGTCTAGGAGGAGCAGGAGTCGTTCTGAGCGAGATAGAGAGAGAGAGCGTGATTTCGACATGAGAGATAACCGGAAATTTAGGGAAAAGAAAGAGGCAGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTATCAGATGCCCTTAAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCAAAAGCTGGCAAGGTCAGGGATGTTCGTCTGATCATGGATAGGAACTCAAGACGTTCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCGCTCTCTGGCCAACTTCTTCTCGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACGACTAGTGGAGGTGCTGGGATAGCAGGACCATATGGAGCTGTGGACAGAAAACTGTACGTGGGGAACCTTCACTTCAACATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATCGCTGGGAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCTAGCATTGGTCTACCCATTGTGAACGGATCAGCACCTGTTCAACAGGCTATTAGCATGCCCATTGGTAATCCAGGTATCTCACCCCCACCAACTCTCCCAACTCAAGTTATACCTACCCAAGTGGCAGAACCTGTTGGAAATCCCAGTGAGTGTTTACTGTTGAAGAATATGTTCGATCCAACCACTGAGACGGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATTTGGGAGGGTGAAGCATATCTATGTTGACAAAAGAAGTGCAGGTTTTGTTTATTTGCAGTTCGAAACGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACATGAGGTGGTTTGCACGCAGATTGATTTCAGCTATCTTCATGCAACCTCAGATATACGAAGCCAAGTTTAAAGGGGAAGCTTGA 1644 0.4659 MDFDEYDYLEKTVEEQEDKDSSKKKKESSDKTERSYRKREEIDDATEERKSKRSRGDDENGSKKDKDRDDRDKDRHKSSRDRDRDKDGERSSRVRDREKERDKERDRREKDKERDRRERDRDRERTEREREREEKERSRRSRSRSERDRERERDFDMRDNRKFREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGGAGIAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIVNGSAPVQQAISMPIGNPGISPPPTLPTQVIPTQVAEPVGNPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIFMQPQIYEAKFKGEA* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0494 547 Gene3D - 279 375 IPR012677 -
Apr1g0494 547 SMART rrm1_1 284 357 IPR000504 GO:0003723
Apr1g0494 547 SMART rrm1_1 454 531 IPR000504 GO:0003723
Apr1g0494 547 SMART rrm1_1 182 254 IPR000504 GO:0003723
Apr1g0494 547 MobiDBLite consensus disorder prediction 12 154 - -
Apr1g0494 547 CDD RRM1_RBM39_like 182 254 - -
Apr1g0494 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Apr1g0494 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Apr1g0494 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 546 - -
Apr1g0494 547 Coils Coil 114 148 - -
Apr1g0494 547 PANTHER CC1-LIKE SPLICING FACTOR 1 546 - -
Apr1g0494 547 SUPERFAMILY RNA-binding domain, RBD 282 360 IPR035979 GO:0003676
Apr1g0494 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 529 IPR000504 GO:0003723
Apr1g0494 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 250 IPR000504 GO:0003723
Apr1g0494 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 355 IPR000504 GO:0003723
Apr1g0494 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 376 471 IPR029123 -
Apr1g0494 547 MobiDBLite consensus disorder prediction 1 154 - -
Apr1g0494 547 Gene3D - 449 546 IPR012677 -
Apr1g0494 547 CDD RRM3_RBM39_like 452 534 - -
Apr1g0494 547 Gene3D - 112 268 IPR012677 -
Apr1g0494 547 CDD RRM2_RBM23_RBM39 285 357 - -
Apr1g0494 547 SUPERFAMILY RNA-binding domain, RBD 120 256 IPR035979 GO:0003676
Apr1g0494 547 TIGRFAM SF-CC1: splicing factor, CC1-like family 70 543 IPR006509 GO:0003723|GO:0005634|GO:0006397
Apr1g0494 547 SUPERFAMILY RNA-binding domain, RBD 450 534 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0494 Apr-Chr1 6043381 6050480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0494 255 356 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 1.34e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0494 K13091 - gmx:100802446 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0494 1 6043381 6050480 Apr1g0494 1 6043381 6050480 ECH
Apr8g1148 8 16523890 16530790 Apr1g0494 1 6043381 6050480 PCT