Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0490 ATGGATTTGGACGATTTCCGATCCATATTGGAGACTGCGGGCGTCGACGTGTGGTTGTTCATCGACACCGCAATCACCGTCGCGTCCTTGGATTACGCCGCCGAATTGAAACACCGCCGAGATGGAATCGTCGAGCGCCTATACGCCGCCACGACGGCTCCTCCGCGATGCCGGAATTGCGAAGGTAACAATCGCCTCATGTCCAACGGTCACCAAGTGAAGAAACAGAGCAGCCCTAGCCCTAGCCCTGAACGACAACGACACCAGCCCCGTGGCAATTCCTCTCCCGCAACGCCGCAGTCTCTGGAAAATGACAAAGACAACGGCGACGACGACGATGAAGAGGTAGATCCTTACGGTGGTTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGCTCCTGACCAGTCCGAAGATTCGTTGGTAGAGTTGCTACAAAATCTTGCGGATATGGATATTACATTTCAAGCGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTGCGGAAGCATCCTTCCAATGACGTTCGGCGATTGGTGAAGCTCCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAATGGGTGAAGTTGAATCCACAGGGAAGAACCAACACTCTCATGGCTGATGGAGACTCGCCTCTGCTGAAAACCAGCCAAAATGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCTGGGTCAGACCGTAACAACTCATCAGAAGCAGAACACAAACCAAAAGTAATTCCCCGCAGTGAAGCTCCGCCAAAACCCACGCCATCACCATCAGTTTCCACCCCTGCTTTCGCCTCTCAAAATAGACAGAGGGAACACAGAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCTGCCAGAAGACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCGAAATCAAAACCCAAGAATGCCTTCTTTGGAAAGAATAAAGGTGGCGGTAGTTCTCAGGGAAGGCACTGGTGA 1077 0.5051 MDLDDFRSILETAGVDVWLFIDTAITVASLDYAAELKHRRDGIVERLYAATTAPPRCRNCEGNNRLMSNGHQVKKQSSPSPSPERQRHQPRGNSSPATPQSLENDKDNGDDDDEEVDPYGGLFDDEQKKILEIKEQLEAPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGRTNTLMADGDSPLLKTSQNGHHQIPDFAYSPNPHNGSSGSDRNNSSEAEHKPKVIPRSEAPPKPTPSPSVSTPAFASQNRQREHRESNFDAERLASARRRLQENYKEAENAKRQRTIQVMDIHELPKSKPKNAFFGKNKGGGSSQGRHW* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0490 358 ProSiteProfiles TFIIS N-terminal domain profile. 125 202 IPR017923 -
Apr1g0490 358 Pfam TFIIS helical bundle-like domain 150 199 IPR017923 -
Apr1g0490 358 MobiDBLite consensus disorder prediction 59 121 - -
Apr1g0490 358 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 358 IPR044790 -
Apr1g0490 358 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 209 IPR035441 -
Apr1g0490 358 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 212 IPR035441 -
Apr1g0490 358 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 358 - -
Apr1g0490 358 Coils Coil 300 327 - -
Apr1g0490 358 MobiDBLite consensus disorder prediction 210 252 - -
Apr1g0490 358 MobiDBLite consensus disorder prediction 106 120 - -
Apr1g0490 358 SMART TFS2_5 130 201 IPR003617 GO:0005634
Apr1g0490 358 MobiDBLite consensus disorder prediction 62 103 - -
Apr1g0490 358 MobiDBLite consensus disorder prediction 210 301 - -
Apr1g0490 358 MobiDBLite consensus disorder prediction 332 358 - -
Apr1g0490 358 CDD TFIIS_I 127 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0490 Apr-Chr1 5986372 5989976 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr1g0490 Med26 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0490 - - aip:107622503 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0490 1 5986372 5989976 Apr1g0490 1 5986372 5989976 ECH
Apr2g0992 2 16177786 16180951 Apr1g0490 1 5986372 5989976 PCT