Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0489 ATGCAGCCACTTCTCAGAAAACGCTTCTTCTTTTTGTCCTCTTCTTCACCGTCTGCAGCTACCGAGCTTCTCGTTCAGCTTCAAGCACGTCAATCATCATCTTCTCCCCATCATGAGTCCCGAAACGTGAGGGTTTCGGTGTGGTGGGATTTTAAGAATTGCAACGTGCCCGCAGGAGTAGACGCTTCGAAAGTAACTCCTGCAATCACTGAGGCCGTTAGAGCCAAAGGAATTAAAGGTCCTCTTCATATCAACGCTTTCGGCGACGTTCAGCAGCTCTCCAAGCTCGACCAGGAAGCACTTGCTTACACCGGCGTTAATTTCATCCACGTTCCTTACGGTGGAAGGAATAGTGTGAATATTCTTGTTGATATTATGTTTTGGGTGTACCAAAATCCTCCACCTGCGCATCTATTTCTGATATCTGGTGATAGAGATTTTGCTGGCATATTACACAGGTTAAGAATGAATAATTACAATATCTTGCTTGCTAGTCCTGGGAACGCTCCTGCTGTTCTTTGCAGTGCAGCAACTATAATGTGGCAGTGGTCTTTGTTGCTTAAGGGAGAAAATCTTATTGGAAAACATTTCAACCATCCTCCTGATGGTCCGTTGGGTTCTTGGTATGGAAACTTTAAGGTGCGACTTGAAAACCCATTCTCGGCTGCGGTGCAGTCTACGTCTTTAGACAATGAGGATGTCTGTGAACCTTCCTTGGACTTAGAGTTAGGTGAGGTTTCAAAGTCGTTTGTACAGCAGGTTAAGCATATATTGAGTTCACATCCGAAAGGGATCTCCATTACAGATCTTCGTGCAGAGTTGATAAAATGTGATAGGCATTTGGGTAAGTACTTCTATGGAGTTAAAAGGTTTGCACAATTTCTATTATCAATCCCACGTGTACAGCTCCAGCCTTTAGAGGACGGTGGATTTTGTGTATGTTTGGTCCCCTCAGAATCCCCTGAACCATTTGAGAGCAGTGTTGTGCCATCAACAAGATTTTCTGTTAAGAATGAGGAGAGCGAAAATGCAGCAACTCCAAAACTCAATGGTGAGGATAAAAATAAGGGTAGACATGCCGATGGGACTCCCTCAATTGCCTCTTTCCATGAAAGTAGTATAGATGATGATTCAAAATCATCCCAACTGGTCACTCCCCAAGGCAAAACCATTGGGGGTTATGTGGATGGTAAATCACCATTTCCTTCATCAGTTGAAAGACATGAATTTAAGCCCCAAAATGACTTGCAGAAGTCTTCTTCTGCTAGTGAGAAGGCTGTGGATGTGGCTAATACACAGCTGCCAACCACAAATGACAAAGTTTCCAAAACTAAGATGGGTTCGTTGAGAAAGAGATCCAAAAAGTCATCTGATTATGACATTGTTAAGACTGAGGATGCAAGTCTTAAAATTATTGAAGAACATACAACTTCAATGAATAACTCTCCTGGAAGTGATAACACAACAATGGAAAACAGTGACATTGCAGATTCTGAATCTGGAAATTTAGAAGCAAAGAACAACAATGAGAATCCAACTAGAAAGGAGGTTGATGAAGTTTTTCCTAGCCAAAATTCTTCACCAGTTGAAGACTCTATGCTTTACAGAAGACTCTGTGGAATTGCTGAAACTTCAGGCAAAAGCCCAACACTCTTTAGCTGGATTAGAAGTTGGTGGCCATTTAGGAAAAGCAATGAAAAGTCTGATGATTTGTCTACTTGTCAGAACAAGGTGGTTAGTCATTTGGAGGATTCTAAATTATCTGTATCTGAACGGGACCAGACTGTTAGTCAGTTTGAAGAGCCCAAGTTATCAGAGCAAGACCAGAATGCTAGTCATTCTGGAAAGCCTGAGTTGTTTTCTAGTGATTCATTTTGGAATGACATGGAATCTTTTATTTTCACACCCAAAGGATCACTTCTTGTTTCCCAGTCGAAAAACAGGGAGGATATGGCACATAATTTACAAAATGATGGACCCCTGATTCTTAGATCTCTCACTGAAAAAGATATCTTTCAATTGGTGGAATTGTTAATAGCAGAGAAAAAATGGTTGGTGGAGAGCCCCTCCAAACCATTTCCTTTTAAGTTAACTCAATCAGTTCAGAAGAACAAATTGATGGACCTATCCCATGGTTCAAATGGTTTGAGATCTCTCTTTCTAAGCAGAACGTCACTGCCCAACTTGCAAAAATCGGTTGAACGTGATATGGAGAAACACAATCAGAGTATTCCTCATACCAGAGTTTCTGCTACTGCCACTGAAACGAAATATACTGAGAGGTCTAGAAATGATATATTAGAAGACTGTCAGAAACTTGTGAGTGATATATTGAGAGAACACCCAGAGGGATATAATATCTGTTCTTTCCGAAGACTATTTGTGGATAGGTATGGTTATCATCTTGACATACAGAAGCTTGGTCACCAAAAGTTGACATCCTTACTAAAGATATTTCCTGGAGTCAAATTAGACTGCACTTATATTTTTCCTTCTGTTCCTGCTGTTTGTGCTTCTGACGGGGATACTTCTATCCTCAAAACTCAAATAAACAATGCCAGTCAGGCTGTCACAAACACAGACAATGAATCATCTTATTCAGCCCCAAAAGATACTAAGTTTTACTCTCCTAGGGAGGAATTAAGTCCTGTTTCTGTTGAGAATTCCAATCAGAGCGATCTGGAATCAAAATTATGTCAGAAAGCCAACGAACTAGATACATCAAAGCATCCTGACTATGAACCCATCGTCTCAGATTATGATGCTTCTGAATCCGACGGAGATTACTCTTATTTAACTCAACCAGAAGAGCAGGGAAAGCGAAAATGTAATGAACTAGACAGTTCTTTTTGGCAGGCTCTGGATTCATGGCACAGAAGTAAGAAAGGAGAGAAAAGTGTGTCGGACAATGTTGGCCTCTTGAGTAATCTGGAGAGTATATTAAATTCATCCAATGAATCGACCCCGGATAAACTTTCCAAAACTCCTACAGGGAATTGCATAGAGAAGCAAAGATCTCAAAAGAACTGTTCATTTGTTGATGACCCAGTCTTTCCTGACAAAGACAGGCTGGTTGATGGGATATTGAAGAGCTTTAAAAAACAAGATGAGTCAAAGATTTTGGGTAATCTCTTCCCATGTCCTAAACCCTCTTGTGAAGGAGTGACTGCAACTGCAAGGATTTCATTTATGCATCCAGCGATGAGGCTCCTTCTCCGAAAGAACCACTTGTTTATGTCATCTTTTTCATATTTTGTTCGGATTGAGGCGCGTGAGTTGTCATCTTCTTCTTCCCGAAATGTGAAGGTTTCGGTGTGGTGGGATTTTGAGAATTGCAGCTTGCCAGCAGATATTAATGCTTCCAAGGTGGCACCGGCGATCACGGAAGCTGTGAGAGCCAACGGAATTAATGGCCCTCTTTCTATTCACGCTTTTGGTGATGTTCTACAGTTATCCAAAGCTAATCAGGACGCGCTTTTTTACACCGGCATTCACTTCACCCACATTCCTGGTGGAAAGAATAGTGCTGATAGATTTCTTCTTGTTGATCTCTTGCGTTGGGTTTCTGAAAATCCTCCGCCTGCACATCTCCTTTTAATATCTTCTGATGGAGATTTTGCTGGCGTACTACACCGGTTACGAATGAATAATTACAATATCTTGCTTGCTAGCACAGCATGTGCTCCTGATGTCCTCTGCAGCGCAGCAACTATAATGTGGCATTGGTTTTCATTGCTTAAGGGAGAAGATATTTTTGGGAAACATTTTAACCATCCTCCTGATGGTTTGCTTGGTTCTTGGTATGGAAATTACAAGGTGACTCTTGATAGCCCGTTCAAAGCCGGTGAGCAGTCTACATCTTTACAAAATGTGGAGATATGTAAACCTTCCTTAGATTTAAAGGCAGCTCCAGCTCCAGCTCCGGCTCCAGTTCCTAATTCAGTTGTAAGGCAGGTTTGGCGTATATTGAAATTTAATCCAAAAGGGATCTCAATTACAGCTCTTCGTGCAGAATTAACAAGACGGAATGTGCAGTTAGATAGAAAATTCTATGGATATAAAGTGTTCTCTCGCTTTCTATCATCATTGCCATGCGTACAGGTCAAGCCTTTAGGTGATGGTAAATTTCGAATACATTTGGTCCCCTCAGAATCCCCTGAACCTGTTGATAGCAAAGCTGTACAGTCAATAATATCTGCTGTTAAGATTGATGAAAGGGGAAATGTAGCAACTCCAAAGCTAAATGGTGAGGATAGAAATAAGGCTAGTGAAGCAAATGAGACACCCTCAACTGCCTCAATCCATGAAAGAAGTATGGGTGATGATTCAAAATCATTCCAGCCAGTCACTTCACTAGGAAGACCCATAGAGGAATATGTAGATGTTAATTCTTCTGTGTGTAGTGAGAAGGTTGTAGATATGGCTACTGCACAACTGTCACTCAAGGACAGCAATGTTTCCAAAACTGAGACAGGTTCCTTAAAAACAAATTATAAAGAGTCTCATGACAGTGGCATTGTTGGGCCTGAGGATGCATGTCATAAAATTCTGGAAAAATGCACTTCTTCAAGGAATCACTCTGAAAATTTTAGAGCAATGAACAAATATGAGAATACAACTAGAAAGGAGGTTGATGAAGTTTGTCACAGCCCATATTCTTCATCAATTGATTACTCTCTGGTTGAGAAAAGACCCGATGAAAGTGCTGAAACTGATAGGAAAGGTCCAACATTCTTTAGCTGGACCAAAAGCTGGTGGTCATTTTGGAAAAACAAAGCAAAGTCTGGTGATTCAACTGCTCATCAAAATGAGGTGGTTAGTGATTTTGAGGATTCCAACTTATCTGAACTAGACCAGAGAGTCCAGACTGTTAGTCATTTTAAAGAGGGGTTATCTGAAATGGAACAGAATGTTATTCATTCTGGAATGCTCGAGTTATTTTCTAGTGGTTCCTTTTGGAATGAGATAGAATCTTTTCTTTTCACTCCCAAAGGATCTCATCTTGTTTCCCAGTCAATAACCAGGGAGGATATGGCACATAAATTACACAAGGATGGAACCCTGGTTCTTAGATCTCTCACTGAAAATGATATCCTTCAGTTGGTGGAGTTGTTAATAGTGGAGAAAAAGTGGTTGGAGGAAAGCCCCTCCCAAGCATTTCCGTTTAGGCTAACTCAATCAGCTTGGAAAAACTCATTCGTGGGCCAATCTCAAGGTGCAAATGGCTTGAGCTCTCTCTTTGTAAGCAGACCATCACAGTCCAACTTGCAAAAATCAGTTGAACACAATGTGAAGAAACACAATCATAGTATTCCTCAGACTAAAGTTTCCACAACTGTCACTGAAACAAAATATACCAAGAGGTCTAGAAATGAGATATTACAAGACTCTCAGAAACTTTTGAGTGAGATGCTGAGGGAACACCCGGAGGGGTATAATTTCAGTTCTTTCAAAGGACTATTTGTTGATAGGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTACCAAAACTTGGCATCATTTCTACAGATAATGCCTGGAGTTAAAGTAGAGTCCACTCATATTTTTCCTTCTGTTTCTGCTGGTGGTGCTTCTGATGGAGAAACTTGTATCCTCAGAACTCAATCTACCAATGCAAGCGATGCTCATGCAGTCTCATACTCAGATAGTGAATTATCTGATTCAGCCCCCAAAGATGGTAACGCGGAATCTCCATGGGAGGAATTAGGTCCTGTTTCTGTCAACAATTCCAATCAGAGTTATCTGGAACCAAAATTAAGTCAGAAAGCCACAGAATTGGATTCATCAAAACATCCAGATTATGAATCCGTTGTCTCAGATTCTGATTATTCGGAATCTGAAGGAAATTCCTCTTGTTTAACTCAACCAGAAGAGCCAGGACAGCGAAAATGTAATGAACAAGACAGTTCTTCTTGGCAAGCTCTGGATTCGTTGCCCAGCAGGAAGAAAGGAGTGCATAGTGCCAAGATGGTGGACAATGTTGAACTCTTTAGTAAATCGCTGTCGCTGCTTGATGTTTTAAATTCACAAAATGAGTCGACCCAACATACACCTTCCAAAATTCCTTCAGGGAATTTCATAAAGAAGGAAAGATCTCGAAAGAATTATTCATTTGTTGCTGACCCAATTTTAACTAACAACGAGGACAAGCTGACTGATGGGATATTAGAGCGCTACAAAAAAGATTGA 6213 0.408 MQPLLRKRFFFLSSSSPSAATELLVQLQARQSSSSPHHESRNVRVSVWWDFKNCNVPAGVDASKVTPAITEAVRAKGIKGPLHINAFGDVQQLSKLDQEALAYTGVNFIHVPYGGRNSVNILVDIMFWVYQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLASPGNAPAVLCSAATIMWQWSLLLKGENLIGKHFNHPPDGPLGSWYGNFKVRLENPFSAAVQSTSLDNEDVCEPSLDLELGEVSKSFVQQVKHILSSHPKGISITDLRAELIKCDRHLGKYFYGVKRFAQFLLSIPRVQLQPLEDGGFCVCLVPSESPEPFESSVVPSTRFSVKNEESENAATPKLNGEDKNKGRHADGTPSIASFHESSIDDDSKSSQLVTPQGKTIGGYVDGKSPFPSSVERHEFKPQNDLQKSSSASEKAVDVANTQLPTTNDKVSKTKMGSLRKRSKKSSDYDIVKTEDASLKIIEEHTTSMNNSPGSDNTTMENSDIADSESGNLEAKNNNENPTRKEVDEVFPSQNSSPVEDSMLYRRLCGIAETSGKSPTLFSWIRSWWPFRKSNEKSDDLSTCQNKVVSHLEDSKLSVSERDQTVSQFEEPKLSEQDQNASHSGKPELFSSDSFWNDMESFIFTPKGSLLVSQSKNREDMAHNLQNDGPLILRSLTEKDIFQLVELLIAEKKWLVESPSKPFPFKLTQSVQKNKLMDLSHGSNGLRSLFLSRTSLPNLQKSVERDMEKHNQSIPHTRVSATATETKYTERSRNDILEDCQKLVSDILREHPEGYNICSFRRLFVDRYGYHLDIQKLGHQKLTSLLKIFPGVKLDCTYIFPSVPAVCASDGDTSILKTQINNASQAVTNTDNESSYSAPKDTKFYSPREELSPVSVENSNQSDLESKLCQKANELDTSKHPDYEPIVSDYDASESDGDYSYLTQPEEQGKRKCNELDSSFWQALDSWHRSKKGEKSVSDNVGLLSNLESILNSSNESTPDKLSKTPTGNCIEKQRSQKNCSFVDDPVFPDKDRLVDGILKSFKKQDESKILGNLFPCPKPSCEGVTATARISFMHPAMRLLLRKNHLFMSSFSYFVRIEARELSSSSSRNVKVSVWWDFENCSLPADINASKVAPAITEAVRANGINGPLSIHAFGDVLQLSKANQDALFYTGIHFTHIPGGKNSADRFLLVDLLRWVSENPPPAHLLLISSDGDFAGVLHRLRMNNYNILLASTACAPDVLCSAATIMWHWFSLLKGEDIFGKHFNHPPDGLLGSWYGNYKVTLDSPFKAGEQSTSLQNVEICKPSLDLKAAPAPAPAPVPNSVVRQVWRILKFNPKGISITALRAELTRRNVQLDRKFYGYKVFSRFLSSLPCVQVKPLGDGKFRIHLVPSESPEPVDSKAVQSIISAVKIDERGNVATPKLNGEDRNKASEANETPSTASIHERSMGDDSKSFQPVTSLGRPIEEYVDVNSSVCSEKVVDMATAQLSLKDSNVSKTETGSLKTNYKESHDSGIVGPEDACHKILEKCTSSRNHSENFRAMNKYENTTRKEVDEVCHSPYSSSIDYSLVEKRPDESAETDRKGPTFFSWTKSWWSFWKNKAKSGDSTAHQNEVVSDFEDSNLSELDQRVQTVSHFKEGLSEMEQNVIHSGMLELFSSGSFWNEIESFLFTPKGSHLVSQSITREDMAHKLHKDGTLVLRSLTENDILQLVELLIVEKKWLEESPSQAFPFRLTQSAWKNSFVGQSQGANGLSSLFVSRPSQSNLQKSVEHNVKKHNHSIPQTKVSTTVTETKYTKRSRNEILQDSQKLLSEMLREHPEGYNFSSFKGLFVDRYGYHLDLQKLGYQNLASFLQIMPGVKVESTHIFPSVSAGGASDGETCILRTQSTNASDAHAVSYSDSELSDSAPKDGNAESPWEELGPVSVNNSNQSYLEPKLSQKATELDSSKHPDYESVVSDSDYSESEGNSSCLTQPEEPGQRKCNEQDSSSWQALDSLPSRKKGVHSAKMVDNVELFSKSLSLLDVLNSQNESTQHTPSKIPSGNFIKKERSRKNYSFVADPILTNNEDKLTDGILERYKKD* 2071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0489 2070 MobiDBLite consensus disorder prediction 346 360 - -
Apr1g0489 2070 Gene3D - 761 827 IPR041966 -
Apr1g0489 2070 Gene3D - 1788 1856 IPR041966 -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 583 616 - -
Apr1g0489 2070 ProSiteProfiles OST-type HTH domain profile. 766 840 IPR025605 -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1882 1980 - -
Apr1g0489 2070 ProSiteProfiles OST-type HTH domain profile. 246 317 IPR025605 -
Apr1g0489 2070 PANTHER LIMKAIN B LKAP 1075 2010 IPR024768 GO:0005777|GO:0010468|GO:1903231
Apr1g0489 2070 PANTHER LIMKAIN B LKAP 11 981 IPR024768 GO:0005777|GO:0010468|GO:1903231
Apr1g0489 2070 CDD PIN_limkain_b1_N_like 1102 1224 - -
Apr1g0489 2070 CDD LOTUS 1798 1851 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 856 871 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1911 1927 - -
Apr1g0489 2070 Pfam NYN domain 44 177 IPR021139 GO:0004540
Apr1g0489 2070 Pfam NYN domain 1102 1236 IPR021139 GO:0004540
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1947 1980 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 324 345 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1882 1898 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 477 527 - -
Apr1g0489 2070 ProSiteProfiles OST-type HTH domain profile. 1311 1382 IPR025605 -
Apr1g0489 2070 CDD PIN_limkain_b1_N_like 44 166 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1931 1946 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 477 508 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 1409 1448 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 320 458 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 591 616 - -
Apr1g0489 2070 Pfam OST-HTH/LOTUS domain 1794 1855 IPR025605 -
Apr1g0489 2070 Pfam OST-HTH/LOTUS domain 767 821 IPR025605 -
Apr1g0489 2070 Pfam OST-HTH/LOTUS domain 249 310 IPR025605 -
Apr1g0489 2070 Pfam OST-HTH/LOTUS domain 1318 1375 IPR025605 -
Apr1g0489 2070 CDD LOTUS 248 315 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 856 893 - -
Apr1g0489 2070 ProSiteProfiles OST-type HTH domain profile. 1793 1877 IPR025605 -
Apr1g0489 2070 CDD LOTUS 767 822 - -
Apr1g0489 2070 PANTHER EMB|CAB71880.1 11 981 - -
Apr1g0489 2070 PANTHER EMB|CAB71880.1 1075 2010 - -
Apr1g0489 2070 MobiDBLite consensus disorder prediction 415 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0489 Apr-Chr1 5969035 5980307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0489 43 189 C2H2 Transcription Factor Family AT5G61190 43.624 2.31e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0489 - - aprc:113850520 4078.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0489 1 5969035 5980307 Apr1g0489 1 5969035 5980307 ECH