Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0484 ATGCTCTCCCTTGTTTTAACTTTGCCAATGACAATAATGCCACTAGAGTTTCTTTGCTGTAATTCGGGGAAACTGATGCTGGAAGCGGTACCCCCCATAGAGAACCCGGAGGGTGGTGGCGTGGCCGTTCCCGATGGGTTGAAAGCGGAGCACGGCGAAGAGGGTGACCGGAATTCCGCCGCGAACCGGTGGCCTCGAGATGAGACAATGGCTTTGCTCAAGATACGGTCTGAAATGGACGTTGCTTTCAAAGATACCAGCCCCAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGCGGAACTAGGATATCATAGGAGTGCGAAGAAGTGCAAGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGAACCAAAGAAGGTCGTTGTGGCAAACCCAACGGTAGCAAAACTTATCGATTTTTCGAGCAATTGGAAGCTTTAGACGGTCACCACTCTCTTCCTCCTCCCCCAACTACTTTACCTACCTCGGAAGAACAACTAGAGGTCACTGCTAAATCTACAACCCATGTGCCCGACAACAACGTTAACGTTATCGAAGATGCGGTTCCTTGTTCCGTTAGATACCCTAGTGCAAACGCTGTGGAATATTATTCTAGTTCCACCACTTCGTCTTCGGGCAAAGGGTCAAAGAAGAAGAAACTGACGCAGTTTTTTGAAGGGCTTATGAGGGAAGTGATAGAGAAGCAAGAAACGCTTCAGAGGAAGTTCATGGAGGTGTTGGAGAAGTGTGAACAGGATCGAATAGCGAGAGAGGAAGCGTGGAAGAATGAAGAGCTTGCTCGGATTAAAAAGGAACGCGAGGTTCTGGCTCAGGAAAGGTCAATTGCTGCGGCTAAAGATGAAGCAGTGCTTGCTTTTCTCAAAAAGTTCACAGAAAACACGGTGCAGTTACCCGAGAAGATTCAGGTTCAAAAGGAGAAAGATAAGGACATGGTAGAGAGTGGTGATAGAGATAAGCAAGAGTGTGGAAATGTTAGTGTCGGGAATTTCATACATATGAGTTCATCGCGATGGCCTAAGGATGAAGTTGAGGCTTTAATAAGGTTGAGGACACAGCTTGATGTGCAGTCTCAAGGGAATGGATCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCAATGAAGAACCTTGGCTATGATCGTAGTGCCAAGAGGTGCAAGGAAAAATGGGAGAACATTAACAAATACTTCAAGAGAATGAAGGAAAAGAACAAGAGAAAGCCTTCGGATTCCAAAACGTGTCCTTATTATCACCACCTTGAAGCTTTATACAGTAAAAAGCCCAAGAAAGTGGATGAGTCGGTTGGTAATTCTGGGAACGAGTTGAAGCCTGAGGAGCTATTGATGCATATCATGGAAAGTCAAGAAGATAGACAACAACAGGTAGAATCATCATCATCTGAAGATGGTGAAGGAGAGAACACGGATCAGAACCAAAGAGAGAATGAAGATCAAGGTGGGTATCACATGGCAATTGCAAATAGTCCTTCCTTAGCAATCATGAGTTAA 1536 0.4525 MLSLVLTLPMTIMPLEFLCCNSGKLMLEAVPPIENPEGGGVAVPDGLKAEHGEEGDRNSAANRWPRDETMALLKIRSEMDVAFKDTSPKAPLWEQVSRKLAELGYHRSAKKCKEKFENIYKYHRRTKEGRCGKPNGSKTYRFFEQLEALDGHHSLPPPPTTLPTSEEQLEVTAKSTTHVPDNNVNVIEDAVPCSVRYPSANAVEYYSSSTTSSSGKGSKKKKLTQFFEGLMREVIEKQETLQRKFMEVLEKCEQDRIAREEAWKNEELARIKKEREVLAQERSIAAAKDEAVLAFLKKFTENTVQLPEKIQVQKEKDKDMVESGDRDKQECGNVSVGNFIHMSSSRWPKDEVEALIRLRTQLDVQSQGNGSKGPLWEEISLAMKNLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPSDSKTCPYYHHLEALYSKKPKKVDESVGNSGNELKPEELLMHIMESQEDRQQQVESSSSEDGEGENTDQNQRENEDQGGYHMAIANSPSLAIMS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0484 511 MobiDBLite consensus disorder prediction 467 481 - -
Apr1g0484 511 MobiDBLite consensus disorder prediction 37 61 - -
Apr1g0484 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 35 510 - -
Apr1g0484 511 CDD GT1 345 410 - -
Apr1g0484 511 SUPERFAMILY Homeodomain-like 344 417 IPR009057 -
Apr1g0484 511 ProSiteProfiles Myb-like domain profile. 56 120 IPR001005 -
Apr1g0484 511 ProSiteProfiles Myb-like domain profile. 345 403 IPR001005 -
Apr1g0484 511 CDD GT1 62 127 - -
Apr1g0484 511 MobiDBLite consensus disorder prediction 459 511 - -
Apr1g0484 511 PANTHER - 35 510 - -
Apr1g0484 511 MobiDBLite consensus disorder prediction 47 61 - -
Apr1g0484 511 Pfam Myb/SANT-like DNA-binding domain 62 149 IPR044822 -
Apr1g0484 511 Pfam Myb/SANT-like DNA-binding domain 345 432 IPR044822 -
Apr1g0484 511 SMART sant 343 405 IPR001005 -
Apr1g0484 511 SMART sant 60 122 IPR001005 -
Apr1g0484 511 Gene3D - 347 408 - -
Apr1g0484 511 Gene3D - 64 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0484 Apr-Chr1 5921045 5923996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0484 56 438 Trihelix Transcription Factor Family AT1G76880 46.222 7.38e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr1g0484 Myb_DNA-bind_4 8.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0484 - - pvu:PHAVU_009G147500g 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0484 1 5921045 5923996 Apr1g0484 1 5921045 5923996 ECH