Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0480 ATGGCTGCCATGAACTCTAGCGTATTGGCCTGTAGCTATGCCATATCGGGTGCAGCATGTTCTGAGCTCAATGCAAAGCTCAGTTCCGTGCCCTCTGTTGCACCCTCTTGTTACAAGTTGCCAGTGATCAAGGCCCAAGAAGCCAGAGCTCCCAAAGCCATGGAATCTCAAGCAAGTGAAGGAAGAAGAACTGCCCTTGTTTTCTTGGCAGCCACCCTTTTCACCTCTGCAGCTGCAGCCTCCAATTTTTCTGCCAATGCTGGGGTCATTGATGAATACCTTGAAAGGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATACACCGTGCAATTTGGCAGCTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGGTCACAGTTCTAGCCTGTGTTATTTTATCCCAAGTCTTGCATTTTACCTTTTCTAATTCTCTTTGTGTTGTGTTTTTTTTTTCCCTGCCCTTCCCCTCTTTTGGGTTTTTGTTTAAGCAGAAAGTGCCATTCCTTACTGAAGATTTAGAGCTTGAATGCGAAGGAAAGGACAAATACAAGTGCGGTTCTAATGTTTTCTGGAAATGGTGA 639 0.4523 MAAMNSSVLACSYAISGAACSELNAKLSSVPSVAPSCYKLPVIKAQEARAPKAMESQASEGRRTALVFLAATLFTSAAAASNFSANAGVIDEYLERSKANKELNDKKRLATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKVTVLACVILSQVLHFTFSNSLCVVFFFSLPFPSFGFLFKQKVPFLTEDLELECEGKDKYKCGSNVFWKW* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0480 212 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 182 212 IPR008796 GO:0009522|GO:0015979
Apr1g0480 212 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 41 143 IPR008796 GO:0009522|GO:0015979
Apr1g0480 212 Gene3D - 88 153 IPR044907 -
Apr1g0480 212 Gene3D - 173 212 IPR044907 -
Apr1g0480 212 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 182 212 IPR008796 GO:0009522|GO:0015979
Apr1g0480 212 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 144 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0480 Apr-Chr1 5891880 5893096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0480 1 152 Calmodulin-binding Proteins AT5G64040 65.385 1.03e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0480 K02701 - gmx:100306036 241.121