Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0479 ATGTATTCTTCTCCACTCCTTCATGACCTTCTTGAGAACTTCCATTCAAGAAGGTTACTCCTCCTTCACTCTCCACTTAACCAATCAGCCAAACCTCCAACAGCTTCTACAACAACCCATGACTCAACAGAAACATATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCCTACTTTGTGCTCTTATTTGTTCACTGGGTTTGAACTCCATCATAAGGTGTGCATTAAGGTGTTCAAATTTAGTGGTGAGTGACTCGGACAGCAATAACCCTCCAGCTAGAGTTGCCAACACAGGACTCAAGAAGAAAGCCCTCAAGACTTTTCCCACAGTAAGCTACTCAACTGAGCTAAAACTCCCAAGTTTGGACTCAGAGTGTATTATATGCTTATCAGAGTTCACTAGTGGAGAAAAGGTGCGCATTTTGCCTAAGTGCAACCATGGGTTCCATGTACGCTGCATTGACCAATGGCTAAGTTCACACTCTTCTTGCCCCAAATGTAGACAGTGCCTTATTGAGACTTGCCAAAAGATTGTTGGGTGCAGGCAACAAGCTAGTTCCTCCCAACAAGCTGTGTTGCCAGAAACCATTGTAACCTTAGTGCCCCTGGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAAGTTAGCTAA 666 0.4384 MYSSPLLHDLLENFHSRRLLLLHSPLNQSAKPPTASTTTHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVSDSDSNNPPARVANTGLKKKALKTFPTVSYSTELKLPSLDSECIICLSEFTSGEKVRILPKCNHGFHVRCIDQWLSSHSSCPKCRQCLIETCQKIVGCRQQASSSQQAVLPETIVTLVPLEPEGLVRNYREVS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0479 221 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Apr1g0479 221 SUPERFAMILY RING/U-box 109 178 - -
Apr1g0479 221 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 220 - -
Apr1g0479 221 Pfam Ring finger domain 130 173 IPR001841 -
Apr1g0479 221 PANTHER RING-H2 FINGER PROTEIN ATL78 2 220 IPR044602 GO:0016567|GO:0016740
Apr1g0479 221 SMART ring_2 131 172 IPR001841 -
Apr1g0479 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0479 Apr-Chr1 5886141 5887091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0479 18 177 C3H Transcription Factor Family AT3G10910 47.059 3.22e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0479 K19040 - gmx:100787934 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0479 1 5886141 5887091 Apr1g0479 1 5886141 5887091 ECH
Apr2g0999 2 16248996 16249670 Apr1g0479 1 5886141 5887091 ECH
Apr2g0999 2 16248996 16249670 Apr1g0479 1 5886141 5887091 PCT