Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0478 ATGGAATATGAAGGGAAATTGGCAAGGGTGGTAGGATTGGGAAAAGACCGTTACGTTTTGAAATCGAAAATCGGAGAAGGTTCATTCTCCGTAGTGTGGAGCGCAGAGCATAGACCAAGTGGTGAAGAGGTTGCAGTGAAGCAAGTTTTCCTCTCTCAACTCAACTCTCACCTCAAATCTTGCTTGGACTGTGAGATCAATTTCTTGTCCTCTGTTAACCATCCCAATATTATTCACCTTCTTCACTTTTTCCAGGATGATGGGTGTGTCTACCTGGTCTTGGAGTTTTGTGCTGGAGGCAATTTGGCTTCTTACATTCGGAGCCATGGGAGAGTTCAGCAACAAACGGCCAGAAAATTCATGCAGCAGCTTGGTTCTGGTCTAGAAGTGTTACACTCTCAGGGCATCATTCACAGAGACTTGAAACCAGAGAACATTTTGCTATCGAGCCATGGGTATGATGCGGTGCTAAAGATAGCTGATTTTGGTCTCTCAAGAATTGTACGCCCTGGCGAATATGCTGAGACAGTTTGTGGTTCTCCATTATACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGCAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAACTTCTAAATGGCTACCCACCTTTTAATGGCAGAAATAATGTTCAGCTGTTGAAAAACATAAGATCTTGCACCTGTCTTCCGTTTTCTCAATGGATTCTTTCAGGATTGGATCCTGACTGTCTTGATATTTGTTCAAGGCTACTATGCTTAAATCCAGTGGAGCGCCTATCTTTTGATGAATTTTATTGGCATAGCTTTCTACGAAGAAAATTGATGGGAACGTGA 852 0.4308 MEYEGKLARVVGLGKDRYVLKSKIGEGSFSVVWSAEHRPSGEEVAVKQVFLSQLNSHLKSCLDCEINFLSSVNHPNIIHLLHFFQDDGCVYLVLEFCAGGNLASYIRSHGRVQQQTARKFMQQLGSGLEVLHSQGIIHRDLKPENILLSSHGYDAVLKIADFGLSRIVRPGEYAETVCGSPLYMAPEVLQFQRYDDKADMWSVGAILFELLNGYPPFNGRNNVQLLKNIRSCTCLPFSQWILSGLDPDCLDICSRLLCLNPVERLSFDEFYWHSFLRRKLMGT* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0478 283 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1T 19 272 - -
Apr1g0478 283 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Apr1g0478 283 ProSiteProfiles Protein kinase domain profile. 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0478 283 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 19 272 IPR045269 GO:0004674|GO:0006914
Apr1g0478 283 Pfam Protein kinase domain 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0478 283 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Apr1g0478 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Apr1g0478 283 Gene3D Transferase(Phosphotransferase) domain 1 14 282 - -
Apr1g0478 283 SMART serkin_6 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0478 Apr-Chr1 5875871 5878851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0478 17 270 CBL-interacting serine-threonine protein kinases AT2G30360 37.308 2.95e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Apr1g0478 Pkinase 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0478 - - lja:Lj1g3v1289070.2 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0478 1 5875871 5878851 Apr1g0478 1 5875871 5878851 ECH