Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0475 ATGCTCAGAGACGATCTATGCATCACCGTTCCCACCTTTTTCAGGTGCCCTATCTCTCTCGATGTAATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTAGACAGCGGCAACAACACTTGCCCCGCCACCATGCAGCTCCTCCGCACCAAAGATTTTGTTCCTAACCGCACCCTACAAAACCTCATCCAGATCTGGTCCGATTCGCTCCTCCACCCACCCGTTTCCGAACCGCTCCCTTCTCCGGGCCAAATCATCCAAGCCGTCGCCGACTTGGACACTGAGCACCGCTTCGGTTTGCTATCGAAAATTTTTCACTTCGCTCAACATTCTCCAGAAAACAAACTCTTCCTTGCCAAAATAGAAGGTTTCGTGAACCAATTGATTCGTTTTCTCGACAATGTCGGCGCCGGAGTAACCGGTAGCGTTGAATTTCTCGAGCAAGTCGTCAAGTTGTTGGATTTGATTCTCGATAGCATCGAAGATCCCGAGGGATTCAAAAACTCTATGTTGAAGGGAAAGAACAAGCAGAGCTTAGATTCTCTGCTTCTCGTTCTGCAACGAGGAAGCTCCGATTCGAAGATTGCCTCCGCTAGGGTTCTGCAATTCATCGCCGTGGACGCCGAGTCAAAGCTTTTGATCGCCGAGAAGGAAGGTTTGGTCACCGAATTGCTACAATCGGCGAAGCCGGAGAAAGATCCGGCGTTGATCGAGAACGCTTTGGCGAGCCTGGTGGCAATTTCAGCGCCGAAACGGAACAAGTTGAAGCTGGTGAGTCTTGGAGCGGTGAAGACGTTATCGAAATTACTAACCGAGTCGAATTTAAGCGTGGCGGTGGTGGAGAAGGTGCTGAAGCTGGTGGAAACGGCCTCGTCGACGAGGGAAGGGAGGAGGGAGATATGCGAGGACGAAGCGTGCGTGGCGGCGATACTGAACAAGGTTCTGAAGGTGTCGAGCGTGGCGACAGAGCACGCGGTGACGACGCTGTGGAGTGTGTGCTATCTGTTTCGGGATCGCAATGCACAGGAAGCGGTTACGCAGGGCAACGGTTTGACCAAGATTCTGTTACTGATGCAGAGTAATTGTTCGCCTCAGGTGCGCCAAATGTGCACTGATTTGCTCAAGATTTTTCGGGTTAACTCAAAGTCATGTCTTTCTTGCTACGACACCAAGACCACGCACATCATGCCGTTTTGA 1227 0.52 MLRDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDSGNNTCPATMQLLRTKDFVPNRTLQNLIQIWSDSLLHPPVSEPLPSPGQIIQAVADLDTEHRFGLLSKIFHFAQHSPENKLFLAKIEGFVNQLIRFLDNVGAGVTGSVEFLEQVVKLLDLILDSIEDPEGFKNSMLKGKNKQSLDSLLLVLQRGSSDSKIASARVLQFIAVDAESKLLIAEKEGLVTELLQSAKPEKDPALIENALASLVAISAPKRNKLKLVSLGAVKTLSKLLTESNLSVAVVEKVLKLVETASSTREGRREICEDEACVAAILNKVLKVSSVATEHAVTTLWSVCYLFRDRNAQEAVTQGNGLTKILLLMQSNCSPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0475 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Apr1g0475 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 82 IPR013083 -
Apr1g0475 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Apr1g0475 408 SUPERFAMILY ARM repeat 94 394 IPR016024 -
Apr1g0475 408 SUPERFAMILY RING/U-box 6 77 - -
Apr1g0475 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Apr1g0475 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Apr1g0475 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Apr1g0475 408 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Apr1g0475 408 Gene3D - 94 396 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0475 Apr-Chr1 5846698 5848221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0475 1 408 U-box Gene Family AT5G64660 53.791 2.31e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0475 - - gmx:100801033 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0475 1 5846698 5848221 Apr1g0475 1 5846698 5848221 ECH
Apr2g1005 2 16316625 16318922 Apr1g0475 1 5846698 5848221 PCT