Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0471 ATGGCTCCTGCCACCTCATCCCCGTCGGCTCAGCGGCACATCGGCTTCAGCCGGCGCACGCAGGCGCCGCGCCACCCGCGCCGTCCGCCGGACGCACCTCCCGCGAAGAAGTACAAGTCGATGACGGAGATAATGGCGAAGGCGCCGTACGCGGTGGTGGAGCGCGATAATTACAGCGACCTGACCTGCGAGCAATGTGGCTCCGGCGAGCTGCCGGAAGAGCTGCTGCTGTGCGATAAATGCGACAAAGGCTTTCATATGAAATGCGTGAGGCCAATCGTCGTGAGGGTTCCGATTGGATCGTGGCTTTGTCCCAAGTGTTCTGGAGAGAGGAGAGTGCGGAGTTTCTCTCAGAAGAAGATAATTAATTTCTTCGGGATTCAGAAGTGTTCTGATGATGTTACAGACAAAGGTTCTTCTTCTCAGGATGCAAAGAAACGCCGGAAACGTTCAGGATCTCTGGTTTTACAAAAGAAAAAGAGGAGGTTGTTACCCTTTGTTCCTACAAAAGATTCTGCCCGGAGATTGAATCAGATGCGTTCCCTTGCTTCTGCTTTAACAGCACTACGTATGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCCGCTAATCAATCCACACTAGAAAATGGTGGCATGCAGGTTCTATCCAAGGAAGATATGGAGACCGTAGAACACTGCAGAGCTATGTCTAAAAGAGGCGAATGCGCACCCTTTATGGTTGTTTATGATTCACATGAAGGCTATACCGTGGAGGCTGATGGCCCAATTAAGGATATGACGATTATTGCTGAATACACTGGCGATGTGGATTACATTAAGAACCGGGAACGTGATGATTGTGACAGTATGATGACCCTTCTTCTTGCTTCAGATCCTTGTGAAGGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGATTTATCAGTGGTATCAACAATCATACACAGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTAAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCGACTCATCATTTTGTCTGA 1131 0.4792 MAPATSSPSAQRHIGFSRRTQAPRHPRRPPDAPPAKKYKSMTEIMAKAPYAVVERDNYSDLTCEQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGERRVRSFSQKKIINFFGIQKCSDDVTDKGSSSQDAKKRRKRSGSLVLQKKKRRLLPFVPTKDSARRLNQMRSLASALTALRMEFSDHLTYLPGMAPRSANQSTLENGGMQVLSKEDMETVEHCRAMSKRGECAPFMVVYDSHEGYTVEADGPIKDMTIIAEYTGDVDYIKNRERDDCDSMMTLLLASDPCEGLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYSVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0471 376 PANTHER HISTONE ACETYLTRANSFERASE 10 374 - -
Apr1g0471 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 122 IPR013083 -
Apr1g0471 376 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Apr1g0471 376 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 10 374 - -
Apr1g0471 376 MobiDBLite consensus disorder prediction 1 16 - -
Apr1g0471 376 Pfam SET domain 133 364 IPR001214 GO:0005515
Apr1g0471 376 SUPERFAMILY SET domain 235 364 IPR046341 -
Apr1g0471 376 MobiDBLite consensus disorder prediction 1 38 - -
Apr1g0471 376 MobiDBLite consensus disorder prediction 136 150 - -
Apr1g0471 376 SUPERFAMILY FYVE/PHD zinc finger 27 108 IPR011011 -
Apr1g0471 376 SMART PHD_3 62 108 IPR001965 -
Apr1g0471 376 Pfam PHD-finger 63 108 IPR019787 -
Apr1g0471 376 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Apr1g0471 376 ProSiteProfiles SET domain profile. 243 364 IPR001214 GO:0005515
Apr1g0471 376 CDD PHD_RSF1 63 107 - -
Apr1g0471 376 Gene3D SET domain 148 376 IPR046341 -
Apr1g0471 376 CDD SET_ATXR5_6-like 239 376 - -
Apr1g0471 376 MobiDBLite consensus disorder prediction 132 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0471 Apr-Chr1 5796414 5800167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0471 58 113 C2H2 Transcription Factor Family AT3G01460 35.714 6.69e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr1g0471 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0471 K24406 - gmx:100785817 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0471 1 5796414 5800167 Apr1g0471 1 5796414 5800167 ECH