Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0467 ATGACCCGTCTCAGAAAACCCACTAAACCCATCACCATCTTCCATCTCTCTATCTCCAAATTCATCCTCATCTTTCTCTTCCTCTCAATGGCATTCTTTTTCCTCTTCATTCTCTTCTTCTTCTTCCCTAGCCACTCTCACTCCTCCTCCGTACAAATCCAACAAGCCTGCAAGGCTACACGCTTCCCTCAACAATGCCACACCTCCCTCAACAACCTCCCACCCCACCCCACCCCGCTCCAAACAATCCAATCCGCCATTGAAATTTCCTCCTCCAACCTCAACACCGCGCGATCTAAGCTCAACTCCATCGTAGACGCCTCCGCACCCAATCACACCCGCACCACCGTCGCCAACACCTGCCTCCGGGTCCTCCGATACTCCCACCACCGCACCTCCCTCGCCGCCCACGCGCTCCCTCGTGGAATGACCAAAGACGCTCGCGCCTGGATGAGCGCCGCCTTGGCCTACCAGTACAATTGCTGGTCTGGTCTCAAATACATCAACGACACCGCATTGGTAGCCGAAACGATGTCGTTTCTCGAAACCCTCACAGCACTCTCCAGCAACGCCCTCAGCATGATGGTTTCCTACGACCTCTTCGGAAACGACACCGCTTCGTGGAGGCCGCCCCTAACGGAGCGTGACGGCTTCTGGGAACCGTCAGGGTCGGACCTAGTCGGGTCGGGACCCGCTTTACCCTCGACATTGACACCGGACGTTACGGTGTGTAAGGACGGGGGATGTTATAAGACGGTGCAGGAAGCCGTTAACGCGGCGCCTGATAACGGGGAACGGAGGTTTGTGATACACATAAAGGAAGGTGTTTATGAGGAGAGGGTTAGGGTTCCGTTACGGAAGAGGAATGTGGTGTTCTTGGGCGATGGCATGGGGAAGACCGTGATTACGGGATCTGCTAACGTTGGTTTGCAGCCCGGCATGACAACCTACGACTCAGCCACCGTAGGGGTTGCTGGGGATGGATTCATGGCGAAGGATCTCACAATCCAGAACACGGCTGGTCCTAATGCTCACCAAGCTGTGGCCTTCAGATCAGACAGTGATCTTTCTATCATTGAGAACTGTGAATTCATAGGCAATCAAGATACTCTTTATACCCATTCCCTGCGCCAATTCTATAAATCTTGCCGTATCCTTGGTAACGTGGACTTCATCTTTGGGAACTCAGCTTCGATCTTCCAAGACTGCAAAATCCTTGTCCGGCCCCGGCAAGTCAGGCCAAAGAAGGGGGAGAACAATGCCATTACTGCCCAAGGCAGGACAGACCCTGCTCAGTCGACGGGCTTTGTTTTCCAGAACTGCTTGGTTAATGGTACTGAGGAATATATGGCGTTGTATTATAGCAAGCCTAAAGTTCACAAGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATTATTGGAAGCCCTTATCACACCAGAGGGTTGGATGCCATGGAGTGGAGATTTTGCGTTGCAAACACTTTACTATGGCGAATTTGAGAACTCCGGACCTGGTTCTAATTTAGCTCAGAGGGTGCCCTGGAGCGACAAGGTCCCTGCCCAGCATGTGTTATCGTATTCCGTGCAGGGTTTCGTTCAAGGAGATGATTGGAATCGTGTTTCCAGTTATTAG 1656 0.5211 MTRLRKPTKPITIFHLSISKFILIFLFLSMAFFFLFILFFFFPSHSHSSSVQIQQACKATRFPQQCHTSLNNLPPHPTPLQTIQSAIEISSSNLNTARSKLNSIVDASAPNHTRTTVANTCLRVLRYSHHRTSLAAHALPRGMTKDARAWMSAALAYQYNCWSGLKYINDTALVAETMSFLETLTALSSNALSMMVSYDLFGNDTASWRPPLTERDGFWEPSGSDLVGSGPALPSTLTPDVTVCKDGGCYKTVQEAVNAAPDNGERRFVIHIKEGVYEERVRVPLRKRNVVFLGDGMGKTVITGSANVGLQPGMTTYDSATVGVAGDGFMAKDLTIQNTAGPNAHQAVAFRSDSDLSIIENCEFIGNQDTLYTHSLRQFYKSCRILGNVDFIFGNSASIFQDCKILVRPRQVRPKKGENNAITAQGRTDPAQSTGFVFQNCLVNGTEEYMALYYSKPKVHKNYLGRPWKEYSRTVFIHSLLEALITPEGWMPWSGDFALQTLYYGEFENSGPGSNLAQRVPWSDKVPAQHVLSYSVQGFVQGDDWNRVSSY* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0467 551 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 37 546 - -
Apr1g0467 551 SMART PMEI_2 48 194 IPR006501 GO:0004857
Apr1g0467 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 194 IPR035513 -
Apr1g0467 551 Pfam Plant invertase/pectin methylesterase inhibitor 53 194 IPR006501 GO:0004857
Apr1g0467 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Apr1g0467 551 CDD PMEI-like_3 56 195 - -
Apr1g0467 551 SUPERFAMILY Pectin lyase-like 236 548 IPR011050 -
Apr1g0467 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 193 IPR006501 GO:0004857
Apr1g0467 551 Gene3D - 234 550 IPR012334 -
Apr1g0467 551 PANTHER PECTINESTERASE 37 546 - -
Apr1g0467 551 Pfam Pectinesterase 240 543 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0467 Apr-Chr1 5763857 5766371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0467 46 550 Carbohydrate Esterase AT5G09760 66.990 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0467 - - gmx:100802102 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0467 1 5763857 5766371 Apr1g0467 1 5763857 5766371 ECH
Apr2g1012 2 16431070 16432842 Apr1g0467 1 5763857 5766371 PCT