Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0466 ATGAGCACACTGAGCACACTGCATTATTCTAAGGGAAGAAGCGTTACAGTTTTGGCAAGTGAGATGAGTGGAAGTGGCAGAAAGCGCTCTACAAAGTGGGATTTGAGAGATGATCCTGAGTTTGTACTTGATAGTAAGCAATTGCGGGCTGGGTGGTCCTCTGCAGATGTTGCTGGTGGCAATAGTTCAAAGTGGTCTTATTTGGAAGGCAGTGATAAATCAAAGCCTGGTATGGGATTTTCATCTAATGAACCTTTTCCTGGAGGCAGGGGGTCAAATAAGGGTGATATTATGAATAAAGACCATACATTTTTGGATGCTACGATGGAATGGGATGCAGATGAAAATTATAGAAAGAAAATGTCTCCTGGGTTTGAGGAATGGAAAAATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCAGTGAGAAGTCGGAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCTGGAGTCAATGAGAAAAATAGGATGAGAGCTGGAGTATCAACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGGAGAGGTAGCCATTGCCATTTTCTTCATCATGATAATAAAAATCACGAGGATAGTTGGGAAAATAAGTGCAGGGAAGATGGGGCTCCCAGATATTCTGCACCGCATGAGAGTAGAGACCATTCTCATAAGAGTGGTAGATCTAATGAAACTTGTATTAACTATGCAAAAGGTAGGTGTAGAATGGGAGCATCATGTAAGTTTGTGCATCATAACAATTCTGATGGACACGGTAAAGTTTCTATGGATGAATTAACTAGAGAAAGGGAAGTTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATGGGCCAAACCGTAGTGGTGAAACACTCTGCAAATATTTTGCAAATGGAAATTGTCGTAATGGTAAATATTGTAGATTTTCTCATGATAAGCAAGCATGTACAAGCCCTAATAGAAGAGTAAGAGATGATAGGTGGCCAGGCAATCCAGGAGGAGATAATCAGATGCTGGATAGGCCAAAATTGAGTGACTCATTAAGTCCTCATAGAAGGCTAAGAGATGATAGGTGGGATTCAGATGGTAAAGCTGATGCAGATAAAGTTTTGGACGGTCCAAAGCGGACTGATACAGTTGCTGTCCCTGATACAGTAAAGCTTGTTGATGACAAAAGTGGAGGTGTGGGTACCACAGAGCCAGGATTTACTGCTTGGCCCCCGAGGGATGGATGGGGTCATAGCTTGGATAAGAGCAAAGTGCGTGGTGAACCACCATTTTCAAGTGATAAGAAGGAAGGTGACAGTTGGATAGCTGGAAGTACTGGTGCCAACAAGCATAGTTTCCATACAACAGGTACAGACATTTGGCTTGGTGATGCAAAAATGTCTCCGGATTGGGATTACAGGGTGGGATCTTCCAGCCGTATTGAAAAAGGTCATGAACAAAATAAGCATGGGATAACACAAAGTGGTATGTATTTAGCTGCCTCTGAACATGACAGAACTCAAATTGCCCCAGGACAAGGCTTTAATCAGAATGCCCAGAGTTTAAATCCTCTGCATTCTTCAAGCAGCCAAGCAATTGCTCAAAGTCATGTGGCAGCTTCCATTCTTCCATCAAGAGGAGGAATTGTTGATGGTATGCAGAACCAACAAGTCTCTACTGAGAAAAAGTACATTGCTGAATCCAATATCATGGATGCAGGCTTATCACAAGTTAGTTCAAAAAATCCTCCTCCAACTCAGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCACAGCCTCTCTGGCTCATATCCTTGGGACAGGTCAGCAGCTGCCACAACTTTATTCTGCCTTGATATCTCATGATGCAAAGGGCACTCCCTCCCTAGCAAAAACTGAAGTGCCTGCTATGTCTGTTTCCAATACATTAATCAAGCCAGATCCTGCTGTTGGACTCCCGGAGCAGTATGATCCAATGTTTGACAGTATTGAGCAAAAGAGTGCTGTTGCAAGTGGGGTGCCCCCAGTCATTCCTTCAAGAAAAATTGCAGAAGATGAAGTAGAAATTCCGTCAAAGTTGTCTAACTCAGAGAAACAAAATTGTGGTGATTCTTTGAAGGCTGCTTGCTCAGAAGAACTTGTCAAGAGTGATCATGTAATCCAGTTGCAGCTGGGTCAAAACACTGAGGTTAATAAGGATAACAAGGAAGTGGTAGCCGAGGAAAGGAAAAATTCTCAGGATGATCATAAAAATAGTCCTTTGGAAAACATGGACCCAAATGATGGTCCTGATGAGGCCAAGAAAACTAAAGACATGAAGGGGATTCGTGCATTTAAATTTGCGTTGGTTGAATTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGATGGTCGAATTACCAAAGAAGATTATAAAACAATTGTGAAAAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGGGACCCATATTCCTCACACACAAGAGAAAATTGACCAGTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 2595 0.4239 MSTLSTLHYSKGRSVTVLASEMSGSGRKRSTKWDLRDDPEFVLDSKQLRAGWSSADVAGGNSSKWSYLEGSDKSKPGMGFSSNEPFPGGRGSNKGDIMNKDHTFLDATMEWDADENYRKKMSPGFEEWKNKRHSQSPKNGWSRSVRSRSRSPPHGFRWDSGVNEKNRMRAGVSTQPCRDFAAGKCRRGSHCHFLHHDNKNHEDSWENKCREDGAPRYSAPHESRDHSHKSGRSNETCINYAKGRCRMGASCKFVHHNNSDGHGKVSMDELTREREVDRRHRDSSFEQGGGHGPNRSGETLCKYFANGNCRNGKYCRFSHDKQACTSPNRRVRDDRWPGNPGGDNQMLDRPKLSDSLSPHRRLRDDRWDSDGKADADKVLDGPKRTDTVAVPDTVKLVDDKSGGVGTTEPGFTAWPPRDGWGHSLDKSKVRGEPPFSSDKKEGDSWIAGSTGANKHSFHTTGTDIWLGDAKMSPDWDYRVGSSSRIEKGHEQNKHGITQSGMYLAASEHDRTQIAPGQGFNQNAQSLNPLHSSSSQAIAQSHVAASILPSRGGIVDGMQNQQVSTEKKYIAESNIMDAGLSQVSSKNPPPTQNVVGKEQLAQLTNLTASLAHILGTGQQLPQLYSALISHDAKGTPSLAKTEVPAMSVSNTLIKPDPAVGLPEQYDPMFDSIEQKSAVASGVPPVIPSRKIAEDEVEIPSKLSNSEKQNCGDSLKAACSEELVKSDHVIQLQLGQNTEVNKDNKEVVAEERKNSQDDHKNSPLENMDPNDGPDEAKKTKDMKGIRAFKFALVEFVKELLKPTWKDGRITKEDYKTIVKKVVDKVTGTMQGTHIPHTQEKIDQYLSFSKPKLNKLVQAYVEKVQKA* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0466 864 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 196 IPR000571 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 421 439 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 258 297 - -
Apr1g0466 864 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 22 862 - -
Apr1g0466 864 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 353 383 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 741 778 - -
Apr1g0466 864 ProSiteProfiles Zinc finger C3H1-type profile. 231 258 IPR000571 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 258 286 - -
Apr1g0466 864 Pfam RNA-binding, Nab2-type zinc finger 237 255 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 399 443 - -
Apr1g0466 864 ProSiteProfiles Zinc finger C3H1-type profile. 295 322 IPR000571 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 214 232 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 733 778 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 135 149 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 127 161 - -
Apr1g0466 864 MobiDBLite consensus disorder prediction 214 233 - -
Apr1g0466 864 Gene3D - 171 259 - -
Apr1g0466 864 SUPERFAMILY CCCH zinc finger 297 320 IPR036855 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 53 99 - -
Apr1g0466 864 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 22 862 - -
Apr1g0466 864 Pfam CCCH-type zinc finger 300 320 IPR041367 -
Apr1g0466 864 SMART c3hfinal6 232 257 IPR000571 GO:0046872
Apr1g0466 864 SMART c3hfinal6 171 197 IPR000571 GO:0046872
Apr1g0466 864 SMART c3hfinal6 295 321 IPR000571 GO:0046872
Apr1g0466 864 MobiDBLite consensus disorder prediction 326 385 - -
Apr1g0466 864 Gene3D - 282 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0466 Apr-Chr1 5752761 5760873 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g0466 zf-CCCH 0.00012 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0466 - K22909 gmx:100783856 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0466 1 5752761 5760873 Apr1g0466 1 5752761 5760873 ECH