Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0461 ATGGCTGCATCCACTGCTGGAAAGGTTATACGCTGCAAAGCTGCGGTGGCATGGGAAGCTGGAAAGCCACTGGTGATAGAGGAGGTTGAGGTATCTCCACCACAAGCAAATGAGGTTCGTGTCAAGATCTTGTTTACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCTAAGGGACAGACACCATTATTTCCACGCATATTTGGTCATGAAGCGGGAGGAATTGTGGAAAGTGTTGGTGAGGGTGTGACGGATCTGAAGCCCGGTGATCATGTGCTTCCAGTGTTCACAGGAGAGTGCAAGGAGTGTCAGCACTGCAAATCAGAAGAAAGCAACATGTGTGACCTACTAAGGATTAATCCTGACCGTGGAGTAATGCTGAACGATGGCAAGTCTAGGTTTTCAATCAATGGACAACCAATATACCACTTTGTTGGAACCTCCACTTTCAGTGAATACACTGTAGTCCACGTTGGCTGTCTTGCCAAGATCAACTCTGCTGCCCCACTTGACAAAGTTTGTGTTCTTAGCTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCAAAACCAACCAAAGGTTCTTCAGTAGCTATATTTGGATTGGGAGCAGTGGGTCTTGCCGCTGCTGAGGGAGCTAGACTTGCTGGTGCTTCTAGGATTATTGGAGTTGATTTGAATTCTAAGAGATTCAATGAAGCTAAGAAGTTTGGTGTTACTGAGTTTGTGAATCCAAAAGATTATAACAGGCCCGTTCAAGAGGTAATTGCTGAAATGACTGGTGGGGGAGTTGACCGAAGTGTTGAGTGTACTGGAAGTATTAGTGCTATGATCTCTGCATTTGAATGCGTTCATGATGGATGGGGTGTTGCTGTACTTGTCGGGGTACCAAGCAAAGATGATGCTTTCAAAACACATCCTATTAATGTCTTGAACGAAAAGACGCTCAAGGGTACTTTCTTTGGAAACTATAAACCACGTTCTGACCTCCCATCGGTGGTGGAGATGTACATGAACAAGGAACTTGAACTGGAGAAATTTATCACCCATGAAGTACATTTCTCAGAAATCAACAAGGCCTTTGACTACATGCTTAAAGGGGAGAGCCTGCGTTGTATAATCCGCATGACTGAGTAG 1146 0.4511 MAASTAGKVIRCKAAVAWEAGKPLVIEEVEVSPPQANEVRVKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECQHCKSEESNMCDLLRINPDRGVMLNDGKSRFSINGQPIYHFVGTSTFSEYTVVHVGCLAKINSAAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARLAGASRIIGVDLNSKRFNEAKKFGVTEFVNPKDYNRPVQEVIAEMTGGGVDRSVECTGSISAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPINVLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVHFSEINKAFDYMLKGESLRCIIRMTE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0461 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Apr1g0461 381 Gene3D - 184 322 - -
Apr1g0461 381 CDD alcohol_DH_plants 10 378 - -
Apr1g0461 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
Apr1g0461 381 Pfam Alcohol dehydrogenase GroES-like domain 37 162 IPR013154 -
Apr1g0461 381 PANTHER ALCOHOL DEHYDROGENASE 1 4 379 - -
Apr1g0461 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Apr1g0461 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Apr1g0461 381 PANTHER ALCOHOL DEHYDROGENASE 4 379 - -
Apr1g0461 381 Gene3D - 20 371 - -
Apr1g0461 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0461 Apr-Chr1 5699833 5703962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0461 37 371 Monolignol Biosynthesis Gene Families AT2G21890 25.000 1.24e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0461 K18857 - gmx:100783318 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0461 1 5699833 5703962 Apr1g0461 1 5699833 5703962 ECH