Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0459 ATGGATCATACCAACCAGAACACTACCACTACATTCACAAATGTTCATAGCACTTGGAATAATCAAGAGAATATGGGAACGGATGAACATAATAACAGCATCTTCCATGATCACCATCATCAAATTCCGATGGGTTCAACAATTTGGCCCAACTACCACCCTCTTCACATACAGTCATCCTCATCCTCATCCACATCCAGGGTGGCACCCTCTTCAGGTTTCCTGAGTGACATACTAGGAACACACTTTGAAGAAGAGGAAGAAGGTGAAGAAGAGTTAGGAGCCATGAAAGAAATGATGTACAAGATTGCTGCTATGCAGCCAGTGGACATAGACCCAGCAAGCATAAGAAAGCCAAAGAGGAGAAACGTTCGCATAAGCGATGATCCACAGAGTGTAGCTGCACGACACAGGAGAGAGAGAATCAGTGAGAAAATTCGCATCCTCCAAAGACTCGTCCCTGGTGGCACCAAAATGGACACAGCTTCAATGCTTGATGAAGCCATTAGCTATGTCAAGTTCTTGAAGAGGCAAATCAAGTTGCTTCAATCAACTCCACATTCTCAACAACCACCAATTAATTGCATTGGTTCTGCTACCACAACTCCTAATAATGGTATCTTCTTGTTACCCACGGGCAGTGATTGGCCTTTTGCACCAAATGTATTGCAAGGTTCCACCAACTCATCCTCTTCCTCCATGGACATGGTGGCTGAAGTGGAGTTGAACACCAGAGCCCATGCCCATGCCGGGGATGCCTCCTCCAGCTTTAACAATCATGAGGTAATTAGTGAATAA 798 0.4486 MDHTNQNTTTTFTNVHSTWNNQENMGTDEHNNSIFHDHHHQIPMGSTIWPNYHPLHIQSSSSSSTSRVAPSSGFLSDILGTHFEEEEEGEEELGAMKEMMYKIAAMQPVDIDPASIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAISYVKFLKRQIKLLQSTPHSQQPPINCIGSATTTPNNGIFLLPTGSDWPFAPNVLQGSTNSSSSSMDMVAEVELNTRAHAHAGDASSSFNNHEVISE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0459 265 Pfam Helix-loop-helix DNA-binding domain 136 175 IPR011598 GO:0046983
Apr1g0459 265 CDD bHLH_AtIND_like 127 184 - -
Apr1g0459 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 242 - -
Apr1g0459 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Apr1g0459 265 SMART finulus 132 181 IPR011598 GO:0046983
Apr1g0459 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 191 IPR036638 GO:0046983
Apr1g0459 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 242 IPR045843 GO:0003700|GO:0006355
Apr1g0459 265 Gene3D - 129 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0459 Apr-Chr1 5687908 5688705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0459 95 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 68.421 2.64e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0459 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0459 - - gmx:100777351 296.975