Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0453 ATGGCCGAAACGAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGACGTTGAGCTGGTTGAGTACTTTCTGAAGAGGAAGGTGTTGGGTAAAAAGTTCCCTTTTGACATCATTGCTGAACTTGATTTATACAAGTATGCTCCATGGGATCTTCCAGATATGTCTTTGCTCAGAACTGGGGATTTGGAATGGTACTTTTTTTGCCCTCGTGGGAAGAAATATTCCACTGGAGGGAGGATGAATCGGGCTACCGAAGCTGGGTACTGGAAGACTACTGGGAAGGATAGGTCAATTGAACACAAGGATCGAGTTGTGGGGATGATAAAAACACTGGTTTTTCACACGGGTAAAGCGCCGAAGGGAGATCGAACTGATTGGGTTATGCATGAATTTAGACTTGAAGACAAATATCTAGCTGATAAAGGCATTCCACAGGACTCCTATGTGATTTGTAGGGTATTCCAAAAGGAGGGTCCTGGTCCAAGGAATGGTGCACAGTATGGTAAACCATTTGATGAGAAAGACTGGGATACAGAAGAGGAAATTGATAGTGTACAATCTGTCCCTGTTGCTAATGTGTCTACTCCAGTTCCTATTGATCCTAGCCCAAGTCAAATATCCGTTGCAGATGACATCCATCCCTCTACAAGTGGATGCATTGGCTTGACCTCTGTATCATGTGTATCAGAATTGATGCCCTCTTTCTCGGCACATCCTTCAGCTTCAAACAATGAAGTTGATGATGACATTTTATGTTTGCTTAATTCTTTCAATGATGATGCATTGGCTGTGAACGAAAACAACAGAATTGAGGCTAACAATGCTGAAGGCACACCAAATTTTGATCCAAATGAGATTTTTGAGAACTTGGGAGACCTTAACAGCTTGGTTGGATTAGGTGAAGGCGGTTTTTCCTGTGGCAAGAATACAAGTGATATGCTTTATATGGGTGATGACTTGTGGTTTCACGACCCCCAAGACTTCTTGGAGTTAATTGACCTAGATGCGCCATTGGGCATGCAGAATAAACATGGTAGTTTAAGCCAAGATAAGCAAGGTTAG 1062 0.4275 MAETKLIPGFRFHPTDVELVEYFLKRKVLGKKFPFDIIAELDLYKYAPWDLPDMSLLRTGDLEWYFFCPRGKKYSTGGRMNRATEAGYWKTTGKDRSIEHKDRVVGMIKTLVFHTGKAPKGDRTDWVMHEFRLEDKYLADKGIPQDSYVICRVFQKEGPGPRNGAQYGKPFDEKDWDTEEEIDSVQSVPVANVSTPVPIDPSPSQISVADDIHPSTSGCIGLTSVSCVSELMPSFSAHPSASNNEVDDDILCLLNSFNDDALAVNENNRIEANNAEGTPNFDPNEIFENLGDLNSLVGLGEGGFSCGKNTSDMLYMGDDLWFHDPQDFLELIDLDAPLGMQNKHGSLSQDKQG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0453 353 PANTHER PLANT NAC DOMAIN PROTEIN 1 237 - -
Apr1g0453 353 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Apr1g0453 353 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Apr1g0453 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 237 - -
Apr1g0453 353 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Apr1g0453 353 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0453 Apr-Chr1 5562701 5565889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0453 1 341 NAC Transcription Factor Family AT5G09330 45.628 9.01e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0453 NAM 1.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0453 - - adu:107470479 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0453 1 5562701 5565889 Apr1g0453 1 5562701 5565889 ECH