LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0450	ATGCCCACTTGGTGGGGTAGAAAATCCAGCAAGAGCAAGGACCAGGAGGACCAGCCACATGGCGGCGGCGGCGTTCTTCACTTCAATTTCATCAAGAAGGCAAAGCCTCATCACAGCCCCAAAACTAATAAATGCTTCGACGACGTCGTTAAGACTTCCCCTAGGGTTAGTCGTGATTTTTCTTCCGACGCCGCCGACAAGCCTGGCCTTCCCTTGCCTCGCCCTTCCGTTTCCTCTACTCAGAGCTTTGGCAACGATCAAGCCCTCGCTTTCGGATCTGCTTCCCTTTCTGGTTCTAGCGTCAGCTCCAATGGCTCCTACGATGATCATTCAACTTATCACTCTCAGATTAATGCCCCCAGAGTACAAGGTGACATGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGGGGCCCCACCAGCCCTACCTCACCTCTTCATCCCAGGTTACATGTTTTGAGTCTTGACTCCCCTACAGGCAAGCAAGAAGATGGAAAGAGTCAATGTCACCCTTTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTTCTCTTTCCAATACAAGAGCAAATGGACTGCCAGAAAACACTATCAGTAACACTTCCAAGTGGAAGAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACATTTGTGTGCAATAAAGGAAGTCAGGGTTATCTGTGATGATCAAACATCCAAAGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCCAACATCGTTCAATACTACGGGAGTGACTTGGGAGAAGAAACCCTTTCTGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCTAATATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGATTTTGGAATGGCTAAACACATAAATTCTTCTACCTCAATGCTTTCTTTCAAGGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAATCTTCCTGTTGATATATGGAGCTTAGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCTTGGAATCAATATGAAGGGGTAGCAGCAATATTTAAAATTGGTAACAGCAAAGATATGCCTGAAATTCCTAATCATCTCTCAAATGATGCAAAGAATTTCATTAACCTATGCTTACAAAGAGATCCATCGGCCCGCCCAACAGCCCAAAAGTTACTAGATCACCCTTTTATTCGAGATCAATCAGCAACAAAAGCTACAAATGTCAGAATAACGAGGGATGCTTTCCCCTACATGTTTGATGGAAGTCGGACACCGACAGCTTTAGAGCTTCATTCCCATAGAACAAGCATAACTTCACTGGATGGAGATTATGCAACAAAGCCAGCTCCTGTAACTTCACGAGCAGTAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGAGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATCCAACTTACACAATGATGGGACAAAATACACTCCCATCATATCCAGTAAGATCAAATGCTACATTCACTCTTGATCCTTGGCATGAAGCATCTTTATACAAAGTCCACACACCCGGTGGATCCCCAAGAACAAGACTCATTTGA	1824	0.4446	MPTWWGRKSSKSKDQEDQPHGGGGVLHFNFIKKAKPHHSPKTNKCFDDVVKTSPRVSRDFSSDAADKPGLPLPRPSVSSTQSFGNDQALAFGSASLSGSSVSSNGSYDDHSTYHSQINAPRVQGDMKFNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGKQEDGKSQCHPLPLPPGSPTSPSSLSNTRANGLPENTISNTSKWKKGKLLGRGTFGHVYLGFNSDSGHLCAIKEVRVICDDQTSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYNLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPNHLSNDAKNFINLCLQRDPSARPTAQKLLDHPFIRDQSATKATNVRITRDAFPYMFDGSRTPTALELHSHRTSITSLDGDYATKPAPVTSRAVRSPRDNTRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTMMGQNTLPSYPVRSNATFTLDPWHEASLYKVHTPGGSPRTRLI*	608

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr1g0450	607	Gene3D	Transferase(Phosphotransferase) domain 1	203	484	-	-
Apr1g0450	607	MobiDBLite	consensus disorder prediction	55	84	-	-
Apr1g0450	607	MobiDBLite	consensus disorder prediction	118	203	-	-
Apr1g0450	607	MobiDBLite	consensus disorder prediction	1	27	-	-
Apr1g0450	607	CDD	STKc_MEKK1_plant	206	463	-	-
Apr1g0450	607	Pfam	Protein kinase domain	208	463	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr1g0450	607	ProSitePatterns	Protein kinases ATP-binding region signature.	213	236	IPR017441	GO:0005524
Apr1g0450	607	MobiDBLite	consensus disorder prediction	94	113	-	-
Apr1g0450	607	SMART	serkin_6	207	463	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr1g0450	607	PANTHER	MAP KINASE KINASE KINASE	1	589	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0450	Apr-Chr1	5515193	5520675	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0450	1	526	MAP Kinase Kinase Kinase	AT1G53570	59.450	0.0	553

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Apr1g0450		Pkinase	6.3e-73	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0450	K04421		-	gmx:100813122	1008.82

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Apr1g0450	1	5515193	5520675	Apr1g0450	1	5515193	5520675	ECH
Apr2g1027	2	16623820	16629459	Apr1g0450	1	5515193	5520675	PCT
Apr2g1209	2	18264445	18271789	Apr1g0450	1	5515193	5520675	PCT

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