Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0450 ATGCCCACTTGGTGGGGTAGAAAATCCAGCAAGAGCAAGGACCAGGAGGACCAGCCACATGGCGGCGGCGGCGTTCTTCACTTCAATTTCATCAAGAAGGCAAAGCCTCATCACAGCCCCAAAACTAATAAATGCTTCGACGACGTCGTTAAGACTTCCCCTAGGGTTAGTCGTGATTTTTCTTCCGACGCCGCCGACAAGCCTGGCCTTCCCTTGCCTCGCCCTTCCGTTTCCTCTACTCAGAGCTTTGGCAACGATCAAGCCCTCGCTTTCGGATCTGCTTCCCTTTCTGGTTCTAGCGTCAGCTCCAATGGCTCCTACGATGATCATTCAACTTATCACTCTCAGATTAATGCCCCCAGAGTACAAGGTGACATGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGGGGCCCCACCAGCCCTACCTCACCTCTTCATCCCAGGTTACATGTTTTGAGTCTTGACTCCCCTACAGGCAAGCAAGAAGATGGAAAGAGTCAATGTCACCCTTTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTTCTCTTTCCAATACAAGAGCAAATGGACTGCCAGAAAACACTATCAGTAACACTTCCAAGTGGAAGAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACATTTGTGTGCAATAAAGGAAGTCAGGGTTATCTGTGATGATCAAACATCCAAAGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCCAACATCGTTCAATACTACGGGAGTGACTTGGGAGAAGAAACCCTTTCTGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCTAATATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGATTTTGGAATGGCTAAACACATAAATTCTTCTACCTCAATGCTTTCTTTCAAGGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAATCTTCCTGTTGATATATGGAGCTTAGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCTTGGAATCAATATGAAGGGGTAGCAGCAATATTTAAAATTGGTAACAGCAAAGATATGCCTGAAATTCCTAATCATCTCTCAAATGATGCAAAGAATTTCATTAACCTATGCTTACAAAGAGATCCATCGGCCCGCCCAACAGCCCAAAAGTTACTAGATCACCCTTTTATTCGAGATCAATCAGCAACAAAAGCTACAAATGTCAGAATAACGAGGGATGCTTTCCCCTACATGTTTGATGGAAGTCGGACACCGACAGCTTTAGAGCTTCATTCCCATAGAACAAGCATAACTTCACTGGATGGAGATTATGCAACAAAGCCAGCTCCTGTAACTTCACGAGCAGTAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGAGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATCCAACTTACACAATGATGGGACAAAATACACTCCCATCATATCCAGTAAGATCAAATGCTACATTCACTCTTGATCCTTGGCATGAAGCATCTTTATACAAAGTCCACACACCCGGTGGATCCCCAAGAACAAGACTCATTTGA 1824 0.4446 MPTWWGRKSSKSKDQEDQPHGGGGVLHFNFIKKAKPHHSPKTNKCFDDVVKTSPRVSRDFSSDAADKPGLPLPRPSVSSTQSFGNDQALAFGSASLSGSSVSSNGSYDDHSTYHSQINAPRVQGDMKFNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGKQEDGKSQCHPLPLPPGSPTSPSSLSNTRANGLPENTISNTSKWKKGKLLGRGTFGHVYLGFNSDSGHLCAIKEVRVICDDQTSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYNLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPNHLSNDAKNFINLCLQRDPSARPTAQKLLDHPFIRDQSATKATNVRITRDAFPYMFDGSRTPTALELHSHRTSITSLDGDYATKPAPVTSRAVRSPRDNTRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTMMGQNTLPSYPVRSNATFTLDPWHEASLYKVHTPGGSPRTRLI* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0450 607 Gene3D Transferase(Phosphotransferase) domain 1 203 484 - -
Apr1g0450 607 MobiDBLite consensus disorder prediction 55 84 - -
Apr1g0450 607 MobiDBLite consensus disorder prediction 118 203 - -
Apr1g0450 607 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g0450 607 CDD STKc_MEKK1_plant 206 463 - -
Apr1g0450 607 Pfam Protein kinase domain 208 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0450 607 ProSitePatterns Protein kinases ATP-binding region signature. 213 236 IPR017441 GO:0005524
Apr1g0450 607 MobiDBLite consensus disorder prediction 94 113 - -
Apr1g0450 607 SMART serkin_6 207 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0450 607 PANTHER MAP KINASE KINASE KINASE 1 589 - -
Apr1g0450 607 MobiDBLite consensus disorder prediction 184 203 - -
Apr1g0450 607 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 589 - -
Apr1g0450 607 ProSiteProfiles Protein kinase domain profile. 207 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0450 607 SUPERFAMILY Protein kinase-like (PK-like) 204 531 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0450 Apr-Chr1 5515193 5520675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0450 1 526 MAP Kinase Kinase Kinase AT1G53570 59.450 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr1g0450 Pkinase 6.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0450 K04421 - gmx:100813122 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0450 1 5515193 5520675 Apr1g0450 1 5515193 5520675 ECH
Apr2g1027 2 16623820 16629459 Apr1g0450 1 5515193 5520675 PCT
Apr2g1209 2 18264445 18271789 Apr1g0450 1 5515193 5520675 PCT