Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0447 ATGAATCTCTCTTATCTCACTCGCTTCCCCGAGCGTCTTGTTGCTCCACTTTGTGCCACAGTTCCCACTACTACAAGGAGCAATATTGCGGAAAATTTTGCAATTGAAGGGCGTAATCTGAATTTCTCATTCACGACGAGGGGAACACAGGATGTGCCAGTTCTGAGGGATTGTTCAATTCGCATTCCTTGTGGGCAGTTTTGGATGCTTCTTGGACCCAATGGCTGTGGAAAATCTACTCTATTGAAGGTTTTGGCTGGTCTGTTGAACCCAACTTCAGGAACAGTGTATGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACTGTAGATGCAGACGTTGCATTTGGTCTTGGTAAGATCAATTTGACCCATGATGAAGTCAGATCTAGGGTGTCAAAAGCATTACATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAAAGGGTTGCAATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGCTGGATGAGCTCACAACATTCTTAGATGAAACTGACCAGGTTGGGGTTATCAAAGCTGTTAGGAACTCTCTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACACATCGTCTGGAAGAACTAGAATATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTTGTCATGCATGGAGATGCCTCTACCATTAGGAGTTTTATTGAAGCCAGGCAATCTGCCTATATTAAGCAGATTAATTCTTAA 795 0.439 MNLSYLTRFPERLVAPLCATVPTTTRSNIAENFAIEGRNLNFSFTTRGTQDVPVLRDCSIRIPCGQFWMLLGPNGCGKSTLLKVLAGLLNPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKINLTHDEVRSRVSKALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNSLDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDASTIRSFIEARQSAYIKQINS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0447 264 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 24 263 - -
Apr1g0447 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 252 IPR027417 -
Apr1g0447 264 SMART AAA_5 64 237 IPR003593 -
Apr1g0447 264 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 24 263 - -
Apr1g0447 264 ProSitePatterns ABC transporters family signature. 160 174 IPR017871 GO:0005524
Apr1g0447 264 Gene3D - 30 263 IPR027417 -
Apr1g0447 264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 260 IPR003439 GO:0005524
Apr1g0447 264 Pfam ABC transporter 55 187 IPR003439 GO:0005524
Apr1g0447 264 CDD ABC_cobalt_CbiO_domain1 36 237 IPR015856 GO:0005524|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0447 Apr-Chr1 5496547 5499533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0447 35 247 Calmodulin-binding Proteins AT2G36910 29.870 1.49e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0447 - - gmx:100813654 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0447 1 5496547 5499533 Apr1g0447 1 5496547 5499533 ECH