Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0444 ATGGGAAGAGCTAGAAGCAGCAGAAGCACCAGCACTGAGAGTAAAAAAAGTTGCAATAGAGGACATTGGAGACCCGCTGAAGATGAAAGACTTAAGCAACTTGTGAAGCAATATGGTCCTCAGAACTGGAACTTTATTTCTGAACATCTTGAAGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTACAATCAGCTAGACCCAAATATTATTAAAAAGCCATTCACTGATGAGGATGAAGAAACGCTTCTAGCACTTCACAAAGTGAAGGGAAACAAATGGGCTGCAATAGCCAGATTCTTCCCTGGAAGAACTGACAATGCTGTCAAGAATCACTTCCATGTATTGACAGCCAGAAGGAGGAGAGAGCGCTTAACACTCTTTGGTGACACCATTGGTCATAATTCAAGGATGAATTTTAACTTGCAAAACTACAAAAACAAAGGAATCTTCGGTGTGTCTTCTTCACAGACACCATCTACTCCTTGGACTCTATTTAGTGGCTCTTCGACCATCACATCAAGTTTTGATGCTTCTTGTGTAGTTAACAAGGCTCACAAAGACTCAAGTGTTTCTTCAAGTGCTGCAGAAAAATCATCATCATCATATGATTTCGAAGCTGTTGGTTCTTCTATTCTTGGCAGTTACCATAGCTTCACTGCACCAGGACTTCCCAGTATTGGCAAGGTTGTTCCCCTTCCACGTAAATTTTCAAACTACAATAATTATGGCCACAGAACTTATGTGGACTCGATCAAAAGCAGCATCACAGGTAAAACTCCACGTGATAACGCACTGTGCAAATCGAGTACCATGATTAGTAATGAGAAAGAACCTCTTAATCTCAAACAAAAGGGTGTTTCGTTCATAGACTTTCTTGGAGTTGGAAGTTCTTCTGCCCATGATGACAATATTAGTGGACCATGA 927 0.4099 MGRARSSRSTSTESKKSCNRGHWRPAEDERLKQLVKQYGPQNWNFISEHLEGRSGKSCRLRWYNQLDPNIIKKPFTDEDEETLLALHKVKGNKWAAIARFFPGRTDNAVKNHFHVLTARRRRERLTLFGDTIGHNSRMNFNLQNYKNKGIFGVSSSQTPSTPWTLFSGSSTITSSFDASCVVNKAHKDSSVSSSAAEKSSSSYDFEAVGSSILGSYHSFTAPGLPSIGKVVPLPRKFSNYNNYGHRTYVDSIKSSITGKTPRDNALCKSSTMISNEKEPLNLKQKGVSFIDFLGVGSSSAHDDNISGP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0444 308 Gene3D - 73 128 - -
Apr1g0444 308 Gene3D - 20 72 - -
Apr1g0444 308 PANTHER OS08G0435700 PROTEIN 7 297 - -
Apr1g0444 308 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Apr1g0444 308 CDD SANT 74 116 IPR001005 -
Apr1g0444 308 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Apr1g0444 308 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g0444 308 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Apr1g0444 308 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Apr1g0444 308 Pfam Myb-like DNA-binding domain 20 66 IPR001005 -
Apr1g0444 308 CDD SANT 23 64 IPR001005 -
Apr1g0444 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Apr1g0444 308 PANTHER MYB PROTEIN-RELATED 7 297 - -
Apr1g0444 308 SMART sant 19 68 IPR001005 -
Apr1g0444 308 SMART sant 71 119 IPR001005 -
Apr1g0444 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 121 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0444 Apr-Chr1 5478885 5479924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0444 15 299 MYB Transcription Factor Family AT4G33450 41.522 8.87e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0444 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0444 K09422 - rcu:8263076 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0444 1 5478885 5479924 Apr1g0444 1 5478885 5479924 ECH