Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0441 ATGGCTTCTACAGCTTGTGGTGAAGTGCTACGGGATAGTCTGGGAAACTTTGTGTTTGCCTTGTGTGAAATGTTGGGACGATGCTTTGTGGTTCAAGATGAACTATGTGCTATATTTCATGGACTTCGAATCATAAAAGAGAGAGGAATTTCTGATCCTATTTTAATAGAGTCAGACTTTGCCACTGTAGTTAAATTCCTAAATGAAGGTTGCCCTAGAGAAAACTCATGTTGTTCTTTGGTCAACCATGTAGTTTATATGGCGGGTGATAACGATAGTGTGAAGTGTGTCCATATTTTCAAAGAGGCCAACCAAGTTGCATATCGTTTTGCTAAGCAGGGGCTATCCATTTTAGGTATGGTGGGAACTAAAAAGGAAATAATTGATCAAAGTTGTGTGGAAAATTTTTCAAAATCTCCTCTGTCCAGACCAGTATGGAGTATTGGTGATGTATATATGAAACACGCGCAGTTTAATCGGGAACCACTTAATCCAAAATTCAGACTTCTTGAACCAATGAACGTGCCTATCTTGTCTGCTAATCCCACTATCATTTCTCATGCTTTGCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAACACCTAACTAATGAAAAAGCTGTGGATATTGTCAACAGCAATCCACACGCCTATGGTGTAGAACCAAACTATTACTACATGGTTTGCATGCTGGGCGAATTGAACCGGGACTTTTGA 732 0.3948 MASTACGEVLRDSLGNFVFALCEMLGRCFVVQDELCAIFHGLRIIKERGISDPILIESDFATVVKFLNEGCPRENSCCSLVNHVVYMAGDNDSVKCVHIFKEANQVAYRFAKQGLSILGMVGTKKEIIDQSCVENFSKSPLSRPVWSIGDVYMKHAQFNREPLNPKFRLLEPMNVPILSANPTIISHALQPNDSFLIFASDGLWEHLTNEKAVDIVNSNPHAYGVEPNYYYMVCMLGELNRDF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0441 243 Pfam Reverse transcriptase-like 5 113 IPR002156 GO:0003676|GO:0004523
Apr1g0441 243 Gene3D - 2 116 IPR036397 GO:0003676
Apr1g0441 243 SUPERFAMILY PP2C-like 147 218 IPR036457 -
Apr1g0441 243 Gene3D - 129 228 IPR036457 -
Apr1g0441 243 Pfam Protein phosphatase 2C 147 220 IPR001932 -
Apr1g0441 243 PANTHER ALPHABET, ISOFORM E-RELATED 147 222 - -
Apr1g0441 243 CDD RNase_H_like 5 112 IPR044730 -
Apr1g0441 243 ProSiteProfiles PPM-type phosphatase domain profile. 1 243 IPR001932 -
Apr1g0441 243 SUPERFAMILY Ribonuclease H-like 7 117 IPR012337 -
Apr1g0441 243 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 147 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0441 Apr-Chr1 5466505 5468299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0441 147 222 PP2C-type Phosphatase Gene Family AT3G17090 69.737 3.98e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0441 K01102 - gmx:100790813 149.058