Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0432 ATGGAAGATGAAAGCCACAGCAATTTGCCAAATGGGCTCATCGCAGGAAGCCCTGAAAGCCCAAGCTTAAAGACATGCAACAACAACAACACTTCTAACACCATCACCACCACCACCAATAGTATCAACAAAGAACAAGATCGCTTTCTCCCTATTGCCAATGTTGGAAGAATCATGAAAAAGGCCATCCCTAGCAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTTGTCACAGGAGAAGCCTCTGACAAATGTCAAAGAGAAAAAAGAAAGACCATCAATGGGGATGATATCATATGGGCCATCACTACCTTAGGATTTGAAGATTATGTTGACCCATTAAAATCCTATCTCCAAAAATATAGAGATATAGAAGGGGAAAAGGTTAATATTCCTAAGCAACAACGTTCTGATCAAAGGCTACATCAACAACACCAAGACCAAAATAATAATCTACCTTTAAGTAGTGTATATTCCTCAGCAAATCTCATTTCTCAACCTCCTTATGTAGCCACGGATCAACTATTTTCCCTTCCATTCTCCCCAAATTCAATTCAGAAACAATTACAGCCGCAAGACCAGATCGATTCAGTTGGCCAATGGTAA 639 0.3975 MEDESHSNLPNGLIAGSPESPSLKTCNNNNTSNTITTTTNSINKEQDRFLPIANVGRIMKKAIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDIEGEKVNIPKQQRSDQRLHQQHQDQNNNLPLSSVYSSANLISQPPYVATDQLFSLPFSPNSIQKQLQPQDQIDSVGQW* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0432 212 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr1g0432 212 MobiDBLite consensus disorder prediction 10 37 - -
Apr1g0432 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Apr1g0432 212 MobiDBLite consensus disorder prediction 1 37 - -
Apr1g0432 212 Gene3D Histone, subunit A 37 168 IPR009072 GO:0046982
Apr1g0432 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 202 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr1g0432 212 SUPERFAMILY Histone-fold 46 154 IPR009072 GO:0046982
Apr1g0432 212 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Apr1g0432 212 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Apr1g0432 212 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Apr1g0432 212 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0432 Apr-Chr1 5341630 5342268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0432 12 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.259 4.56e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr1g0432 CBFD_NFYB_HMF 8.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0432 K08065 - gmx:100778216 302.753