Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0429 ATGAGTACCAACGCCAACCGGAAGCGGCCTGCACCGCCGTCGCAACTTCCACCAGCGAAGCAGGCCTTGACGACAGAGGAAGAAGATTTCGTGGACGAAGACGTGTTCCTTGACGAAACCCTCGTTTCCGAAGACGAAGAGTCCCTCATCCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCTTCTCGTCTTTCCAAATGGACACGTCCCTCTCTTTCCCCCGAATACCTCTCACAATCTCGTAGCGTCATTTTTCAGCAGCTGGAGATTGATTATGTGATCGGAGAGAGTCATAAAGAATTGTTGCCAAACTCATCTGGACCTGCTGCCATTATTAGAATATTTGGAGTTACGAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCAGCTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCACTTTCATCAAACTCTTGAGGGAAGGATGAGAGATGCCAATAGAAACAGTAACGTGGGGAAATTCATTTGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTATTATCAGCAATCCAATTCCCATCCCTTTCTTAAAATTGTAGTTGCACTCCCAACTATGGTTGCCAGCTGCCGTGGCATTCTTGATAGGGGTATTCAGCTCGATGGTCTGGGCATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAATGTAGTTGGTGGGAATTGGATTGAAATTTCTGCTGGAAGATATAAGAAGACAGCAAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCTGAATTGATCAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATACTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTTCCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACATTACAAGGAGAAGATCAGCCATTCATTCGTAATGTGATGACCCTTAAATCTTGTTCTCCTATTGTTGGTGTTGACGTGATGTCATTTGATACAGAAAAAGAAGTCCTACTTGCTTGGAGGGAGTTTATTCATGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCTGCAAACCTTAAAATAGCTGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACTACTTTCTCTTCTAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGCTGTGCAAAGAGACTACAAATTAAGTTCTTATTCACTGAATTCTGTATCAGCACATTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGACGCATATCTTCCTCAACGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCTTTTCTTCTTTCAAGGGGCCAAAGCATTAAGGTGCTTTCTCAACTTCTCAGGAAGGCAAAACAGAAGAACCTGGTCATTCCTAACATCAAACAGGCAGGGTCCGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGCTCGCAAGCTCAACATACCTCCAGAGTCTGTGAACAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTCTTAACAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAAGCAAAGGATCCTCTTGAGAAGGCAGTGCTGGATGGTAGACAACTAGCCCTGAAAATTAGTGCAAATTCTGTGTATGGGTTTACAGGGGCTACCATTGGTCAGTTACCATGTTTGGAGATATCATCAAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACAAAAAAACTCGTGGAAGATAAATTCACAACACTTAATGGCTATGAAAACAATGCTGAGGTAATATATGGAGATACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAATTTGGGGAGAGAAGCTGCTGAATATATTAGTCGAACTTTCACTAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTCTGGACAAAACCGGATAATTTTGACAAAATGGACACAAAAGGCATTGAAACTGTTCGAAGAGACAACTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATTCTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAGTGCAATTTCAGATCTTCTCATGAATCGTATGGATTTATCACTTCTGGTTATTACAAAGGGTTTGACGAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATCCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTATTAAAGCTGCAAAAGGTGCAAAGGCATACGAGAGATCAGAGGATCCTATCTATGTGCTAGAGAATAACATACCAATAGATCCTCAATACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATTTTTGAGCCAATTTTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGTCACACAAGATCTATTTCTATTTCTACTCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATTGGTTGTAAAGCTTTACTTAGCAATGGACATCACACGCTCTGTTCACATTGCAAAGGAAGAGAAGCTGAATTGTATTGTAAAACAGTGGCTCAAGTGGTGGTGTGGCTGCAGTCTCAGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGCCCAATTTTTTATCGACGAAAAAAAGCACAGAAAGATATGGCTGAAGCAAAATTGCAATTGGACAGATGGAATTTCTAAAGATTTTGTCAAGTTCAGGTATTATTGA 3303 0.4151 MSTNANRKRPAPPSQLPPAKQALTTEEEDFVDEDVFLDETLVSEDEESLILRDIEQRQALASRLSKWTRPSLSPEYLSQSRSVIFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMRDANRNSNVGKFICRIEMVQRRSIMYYQQSNSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNVVGGNWIEISAGRYKKTAKSLSYCQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTEKEVLLAWREFIHEVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAVQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYENNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISRTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKSAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDPATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGHHTLCSHCKGREAELYCKTVAQVVVWLQSQSWRCFLGGCGHSVRSAKVHFIRMFSAQVGIAQFFIDEKKHRKIWLKQNCNWTDGISKDFVKFRYY* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0429 1100 Gene3D DNA Polymerase, chain B, domain 1 88 264 - -
Apr1g0429 1100 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 1031 - -
Apr1g0429 1100 MobiDBLite consensus disorder prediction 1 25 - -
Apr1g0429 1100 Gene3D - 293 511 IPR036397 GO:0003676
Apr1g0429 1100 Gene3D Palm domain of DNA polymerase 567 796 IPR023211 -
Apr1g0429 1100 PRINTS DNA-directed DNA-polymerase family B signature 584 597 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr1g0429 1100 PRINTS DNA-directed DNA-polymerase family B signature 676 688 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr1g0429 1100 PRINTS DNA-directed DNA-polymerase family B signature 737 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr1g0429 1100 SUPERFAMILY Ribonuclease H-like 109 531 IPR012337 -
Apr1g0429 1100 TIGRFAM pol2: DNA polymerase (pol2) 559 956 - -
Apr1g0429 1100 Gene3D - 813 968 IPR042087 -
Apr1g0429 1100 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
Apr1g0429 1100 SUPERFAMILY DNA/RNA polymerases 550 960 IPR043502 -
Apr1g0429 1100 CDD POLBc_delta 566 959 - -
Apr1g0429 1100 CDD DNA_polB_delta_exo 288 517 - -
Apr1g0429 1100 Pfam DNA polymerase family B 525 958 IPR006134 GO:0000166|GO:0003677
Apr1g0429 1100 SMART polmehr3 292 751 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr1g0429 1100 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 1031 - -
Apr1g0429 1100 ProSitePatterns DNA polymerase family B signature. 739 747 IPR017964 GO:0000166|GO:0003676
Apr1g0429 1100 Gene3D Helix hairpin bin 640 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0429 Apr-Chr1 5292229 5306897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0429 18 1035 Core DNA Replication Machinery Family AT5G63960 81.435 0.0 1768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0429 K02327 - gmx:100817379 1940.62