Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0428 ATGGCTGTGGATGATGGCAACTTGGATATTGGAGACCTTCAAGATCTTATTTCGAATAACATAGAGAAAGAATATTCTAGTTGGTTAGGCCTAAGCAATTTCAATGACGTGCCAACGAGCCAACTTTATGTCCCACCTCATTCAATACATGAAATGGAATTGGAATGGTTTCCAAGTTCCCCTGATGATTTTATATCTTTGAATGATGTGGGGCTGCTGCCAGGGTACCAAACCTATTTTGCCAATCACAAGCAACACGAGGAGGTTGAAGCAAAGCATCTAACTAAGGAGCCTAATTTGAATCATAAAAAAGATGGGATTGAATCATTGTTGCAAGGTTTTGTTGGGTTTACAAGGAAGAAAAGAAGGACGAAACATTATCAGAAGCCAAAATGGAGAGTGACATGGGTTAAAAAGAGGTGTAGTCATTGCCAAGCAGAAGAGACCCCCCAATGGAGAGAAGGGCCTAAAGGGCCGAAGACATTGTGCAATGCTTGTGGGGTGCGGTTCAAGTCAGGAAGGCTAGTGACTGAGTATCGTCCAGCAACTAGTCCTACCTTTGATAGTCACAAGCATTCTAATTACCATAAAAAGATACTCAAATACCGATCTACAACTTAA 621 0.4138 MAVDDGNLDIGDLQDLISNNIEKEYSSWLGLSNFNDVPTSQLYVPPHSIHEMELEWFPSSPDDFISLNDVGLLPGYQTYFANHKQHEEVEAKHLTKEPNLNHKKDGIESLLQGFVGFTRKKRRTKHYQKPKWRVTWVKKRCSHCQAEETPQWREGPKGPKTLCNACGVRFKSGRLVTEYRPATSPTFDSHKHSNYHKKILKYRSTT* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0428 206 ProSitePatterns GATA-type zinc finger domain. 141 166 IPR000679 GO:0006355|GO:0043565
Apr1g0428 206 Gene3D - 135 201 IPR013088 GO:0006355|GO:0008270
Apr1g0428 206 PANTHER GATA TRANSCRIPTION FACTOR 30 204 - -
Apr1g0428 206 ProSiteProfiles GATA-type zinc finger domain profile. 139 171 IPR000679 GO:0006355|GO:0043565
Apr1g0428 206 CDD ZnF_GATA 140 188 IPR000679 GO:0006355|GO:0043565
Apr1g0428 206 Pfam GATA zinc finger 141 174 IPR000679 GO:0006355|GO:0043565
Apr1g0428 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 196 - -
Apr1g0428 206 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 30 204 - -
Apr1g0428 206 SMART GATA_3 135 189 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0428 Apr-Chr1 5289031 5289651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0428 137 203 C2C2-Gata Transcription Factor Family AT1G08010 67.164 8.28e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr1g0428 GATA 5.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0428 - - aprc:113869248 442.58