Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0427 ATGAAGTTAATCGGCGACGGAGGCGGTGGTCGGAAAGTGTTGGTCGGAGTGAAATTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCACTCGTCAAGGTTGCAGAGCCCGGTGACCTTGTCATTGCACTTCACGTCCTCGACACCATCACTGAGGGCACAGCGTCGCTTCTATCTCTAGTGAAGACTTTCGATTCTGTTCTCGCGGTTTACGAAGGCTTCTGCAATTTAAAGCAGGTTGGTCTAAGGCTTAAAGTGTGTCGTGGTGGTTCAGTTCGGAAGGGTCTGGTGCAAGAGGCGAAATCGTTTGGCGTTTCGACGGTGATTTTGGGAACTTCTAAGTCTCATCACACTATTCGTTCTTCGGCGTGGGTTGCCAAATACTGCGCGAAGAAATTGCCCAAGTGCATCTCTGTTTTCGCTGTTGATAATGGCAAAATTTCTTTTCACAGAGAAGCTACTGGCTTATGTAGTGATCGAGAAAAATTACATGAAGGTCCAAACGTATCTCCAGAACCGTTGGTGGCTTGTACAGATAAAAATGTGAGGAGTTGTGAAAGTTGTTCACTGCAAGAGACATCTGGAACTGAGTATGAGCAAGGTTCGCCTGATGATCTTGAAAAGGGAAACGCACTTGCTTTGGTACCATTTCAAAAACTTGATGATGCTCCTTGTTATTCAGTTGTGGTGGGTGATTCGAAACCTTCAAAACCTGGTTGGTCGATCCTTCGCCAGGTATTTCATTCGAAAAAGCATAGCCCCAAATCTTCATTGAAAAATACATTTGTTTTTCATCGGGCATTACGGCAGCCCCATTGTCATTCTTCGGCTGTAGTCCATCCAGATCATAAACAAATTTGTATTGAGCAGATTGATTATTCCCCCCTGGATGGGGAGAGTGGTGCCATTGTGCCATTTGGATCTGCTACTATCTTTACTCCTCCCTCCCTTTGCAGTGACTTGATTAGCCTTCCAGAAGAATTGTTGGTATTACAGGAGAAGTATTCATCTTCTTGCAGGTTATATAGTTTGCAGGAACTTGTATCTGCAACTGCCAACTTCTCACCTGAAAATTTGGTTGGCAAAGGTGGTAGTAGTTATGTTTACAGAGGATGTCTTCCGGATGGCAAGGAATTAGCTGTGAAAATTTTGAAGCCATCTGAAAATGTGCTGAAAGAGTTTGTACAGGAAATTGAGATCATTACAACTCTGCATCACAAGAACATAATATCTATATCTGGCTTTTGTTTAGAGGGCAATCATTTACTACTAGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGCAATAAAAAGGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACCAGGTGGCTGTGGGTGTAGCTGAGGCGTTGGATTATCTCCATAATGGTTGTGAACAGGCTGTGATCCATAGGGATGTGAAATCTTCAAATATCCTCCTTTCACATGATTTTGAGCCTCAGCTCTCAGATTTTGGTCTGGCTAGTTGGGGTTCGTCTTCTTCCTATATAACTTGTACTGATGTGGCCGGAACTTTTGGATACCTAGCTCCTGAGTACTTCATGCACGGTAGAGTGACTGATAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAGAGTCCGAAGGGCCTGGAGAGTCTTGTTATGTGGGCAACACCAATTTTGAAAGGTGGGAAACTTTCCCAGTTGCTTGATTCAAGCCTGGGCAGTGAATACAATGATTGCCAGATCAAGAGAATGACTTTGGCTGCTACTCTCTGCCTTAGACGGGTACCTACATTGCGACCTCAAATCAGCCTTATATTGAAACTTCTGCTTGGTGATGAAGAAGTGACAAGATGGGCAGAACAAGAAGTTAGTGTACCACAGGAACTCGATGAGTTTGATGAGGAACCAGCGCCAACTAATATTCAGTCTCACCTGAACCTTGCTTTGCTGGACTTGGAGGATGATGCGGTTTCTATCAGTAGCACTGAGCAGAGTGTTTCGTTAGAGGACTATTTGCAGGGAAGATGGAGTCGCTCTTCAAGTTTTGACTAA 2097 0.4402 MKLIGDGGGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGGSVRKGLVQEAKSFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCISVFAVDNGKISFHREATGLCSDREKLHEGPNVSPEPLVACTDKNVRSCESCSLQETSGTEYEQGSPDDLEKGNALALVPFQKLDDAPCYSVVVGDSKPSKPGWSILRQVFHSKKHSPKSSLKNTFVFHRALRQPHCHSSAVVHPDHKQICIEQIDYSPLDGESGAIVPFGSATIFTPPSLCSDLISLPEELLVLQEKYSSSCRLYSLQELVSATANFSPENLVGKGGSSYVYRGCLPDGKELAVKILKPSENVLKEFVQEIEIITTLHHKNIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKKDCSAFGWQERYQVAVGVAEALDYLHNGCEQAVIHRDVKSSNILLSHDFEPQLSDFGLASWGSSSSYITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNESPKGLESLVMWATPILKGGKLSQLLDSSLGSEYNDCQIKRMTLAATLCLRRVPTLRPQISLILKLLLGDEEVTRWAEQEVSVPQELDEFDEEPAPTNIQSHLNLALLDLEDDAVSISSTEQSVSLEDYLQGRWSRSSSFD* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0427 698 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0427 698 Gene3D HUPs 3 139 IPR014729 -
Apr1g0427 698 PANTHER OS01G0253100 PROTEIN 7 692 IPR045271 GO:0004714|GO:0006468
Apr1g0427 698 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 115 - -
Apr1g0427 698 Gene3D Transferase(Phosphotransferase) domain 1 429 642 - -
Apr1g0427 698 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 692 - -
Apr1g0427 698 Gene3D Phosphorylase Kinase; domain 1 325 428 - -
Apr1g0427 698 SUPERFAMILY Protein kinase-like (PK-like) 334 624 IPR011009 -
Apr1g0427 698 Pfam Universal stress protein family 11 135 IPR006016 -
Apr1g0427 698 Pfam Protein kinase domain 357 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0427 698 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Apr1g0427 698 SMART serkin_6 354 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0427 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0427 Apr-Chr1 5278255 5281953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0427 337 620 Trihelix Transcription Factor Family AT1G68690 44.291 1.42e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr1g0427 Pkinase 4.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0427 - - gmx:100815722 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0427 1 5278255 5281953 Apr1g0427 1 5278255 5281953 ECH
Apr5g1853 5 21654908 21658022 Apr1g0427 1 5278255 5281953 ECH
Apr9g0779 9 14285002 14289188 Apr1g0427 1 5278255 5281953 PCT