Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0421 ATGTCTGGAAAGGGGAAGAAGAGGGAGGAACCTGATTTTGCTTCCGAAGGCGACTCTGAAGGTCACGCGCCTCCCAAAAAGTCATTCAAGAAAGATTCCGATGACGATCCCGATTCCATCGTCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCCGTGAGGAATTGGCAAGGAAGGATTGTTGTTGACATTCGTGAATATTACCTCAAAGATGGAAAGCAAATGCCTGGCAGAAAAGGTATCTCATTGACCATGGACCAGTGGAATGTGCTTCGTGATCACATTGAAGAAATTGACAAGGCAGTTAACGAGAATTCTTAG 321 0.4579 MSGKGKKREEPDFASEGDSEGHAPPKKSFKKDSDDDPDSIVVCEISKNRRVSVRNWQGRIVVDIREYYLKDGKQMPGRKGISLTMDQWNVLRDHIEEIDKAVNENS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0421 106 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 103 IPR009044 GO:0003677|GO:0006355
Apr1g0421 106 PANTHER BNAC09G47220D PROTEIN 1 104 - -
Apr1g0421 106 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 104 IPR045125 GO:0003713|GO:0060261
Apr1g0421 106 Gene3D Transcriptional Coactivator Pc4; Chain A 30 106 IPR009044 GO:0003677|GO:0006355
Apr1g0421 106 MobiDBLite consensus disorder prediction 1 39 - -
Apr1g0421 106 Pfam Transcriptional Coactivator p15 (PC4) 43 94 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0421 Apr-Chr1 5204811 5206341 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Apr1g0421 PC4 2.9e-24 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0421 K25815 - gmx:100820368 173.711