Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0405 ATGAAGGGTGAATTAGAGTTACCACCTGGCTTCAGATTCCACCCCACAGATGATGAATTGGTGAACCACTACCTGTGTAGGAAATGTGCAGGGCAATCAATTGCTGTTCCCATCATCAAAGAGATCGACTTGTACAAGTTTGATCCCTGGCAGCTTCCAGAAATGGGTTTTCACGGTGAGAAAGAATGGTACTTCTTTTCTCCACGGGACCGGAAATACCCCAACGGTTCACGGCCCAACCGTGCCGCCGGAACCGGTTATTGGAAAGCCACCGGAGCCGATAAACCCATCGGAAAACCGAAAGCGCTTGGAATCAAGAAGGCACTTGTGTTCTACGCCGGAAAAGCCCCCAAAGGAGTGAAGACCAATTGGATTATGCACGAATATCGCCTGGCCAATGTTGATCGTTCCGCCGGCAAGAAAAACAACTTGAGGCTCGATGATTGGGTGCTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATACAATACGGCAACGCCAAAATTGAATTCTGGGGTGGTTGATGATTATGAGCATGAACACGAGAATGAGACCAAGCCCGAAATTCATAAGCTTGTGAATGAGCAATTATACATGGACACATCAGATTCTGGACCTAGGTTGCACACGGATTCAAGCTGTTCGGAGCACGTGGTTTCACCAGATGGCACGTGCGAGAAGGAGGTGCAGAGTGACCCAAGGTGGAATGATCTAGAGCTACAATTAGACAACGTGTTTGATTTTCAGTTCAATTACTTGGATAATAGCCTGTCGTTGGATGACCCTTTTGGCACCCAGGATCAGTATCAAATGAATCAGCTCTCACCGTTGCAAGACATGTTCATGTTCCTACAGAAGCCATTTTGA 873 0.4696 MKGELELPPGFRFHPTDDELVNHYLCRKCAGQSIAVPIIKEIDLYKFDPWQLPEMGFHGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKYNTATPKLNSGVVDDYEHEHENETKPEIHKLVNEQLYMDTSDSGPRLHTDSSCSEHVVSPDGTCEKEVQSDPRWNDLELQLDNVFDFQFNYLDNSLSLDDPFGTQDQYQMNQLSPLQDMFMFLQKPF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0405 290 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Apr1g0405 290 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Apr1g0405 290 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Apr1g0405 290 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 264 - -
Apr1g0405 290 MobiDBLite consensus disorder prediction 204 231 - -
Apr1g0405 290 MobiDBLite consensus disorder prediction 204 221 - -
Apr1g0405 290 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Apr1g0405 290 PANTHER NAC TRANSCRIPTION FACTOR 56 5 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0405 Apr-Chr1 5048070 5049785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0405 1 290 NAC Transcription Factor Family AT1G01720 63.729 1.10e-129 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0405 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0405 - - gmx:100814504 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0405 1 5048070 5049785 Apr1g0405 1 5048070 5049785 ECH
Apr2g1057 2 16925805 16929959 Apr1g0405 1 5048070 5049785 ECH