Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0400 ATGGGAGACGGCACTGCCACCACCGGCGGCAACCGGTCGAACAGCAATAGCAACAAGCCGGAGTGGCTTCAGCAGTATGATCTGATAGGGAAGATCGGAGAAGGCACGTACGGTCTCGTCTTCCTCGCTCGAATCAAGTCTTCTACTAATCGCGGAAAATCCATCGCCATCAAGAAATTCAAACAATCTAAGGATGGTGACGGTGTCTCTCCCACCGCTATCCGTGAAATCATGTTACTCAGGGAGATAGCGCACGATAACGTTGTGAAACTTGTGAATGTCCACATCAATCATGCAGACATGTCTCTGTATCTAGCTTTTGATTATGCAGAACATGATCTTTATGAAATAATAAGACATCACAGGGACAAAGTCAGCCAACCCATAAACCAGTATACTGTTAAATCGTTACTCTGGCAGCTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATACATAGAGATTTAAAGCCGTCAAATATATTGGCTATGGGTGATGGGGAGGAACATGGGGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATTTATCAGGCCCCTTTGAAGCCATTATCTGAAAATGGGGTAGTTGTAACCATTTGGTATCGTGCACCTGAGCTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGACATGTGGGCTGTGGGCTGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCAACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATACGCAACATATACAGGGACACAAATATGAGAACGCCAGCCTCTATAATGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCACAAGCTTTAGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAGTTATCCCACACGTCCAGTGGACACAACAACTGATTTTGAAGGGACAACTAACATGCAACCTTCACAGCCGGTTACATCTGGAGCTGCAGTTTCGGGGAGCATGCCTGGTGGTCATGCATCGAATAGATCTGTTCCTCGGCCAATGAATGTTGTTGGCATGCAAAGAGTACCTCATCAGGCAATGCAAGCTTATAATCTCACATCTCAGGCAGGGATGGGTGGTGGAATGAATCCCAGTGGTATCCCAGTGCAACGAGGTGTTCCACAGGCACATCAGCAACAGTTGAGAAGAAAAGATCAAATGGGGATGCCAGGATATCCTCCACAGCAGAAGTCAAGACGTATATAA 1422 0.4522 MGDGTATTGGNRSNSNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREIAHDNVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVSQPINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILAMGDGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDTQHIQGHKYENASLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGETFVSYPTRPVDTTTDFEGTTNMQPSQPVTSGAAVSGSMPGGHASNRSVPRPMNVVGMQRVPHQAMQAYNLTSQAGMGGGMNPSGIPVQRGVPQAHQQQLRRKDQMGMPGYPPQQKSRRI* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0400 473 MobiDBLite consensus disorder prediction 370 403 - -
Apr1g0400 473 Pfam Protein kinase domain 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0400 473 SUPERFAMILY Protein kinase-like (PK-like) 21 337 IPR011009 -
Apr1g0400 473 MobiDBLite consensus disorder prediction 426 473 - -
Apr1g0400 473 ProSiteProfiles Protein kinase domain profile. 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0400 473 Gene3D Transferase(Phosphotransferase) domain 1 109 349 - -
Apr1g0400 473 SMART serkin_6 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0400 473 PANTHER CELL DIVISION PROTEIN KINASE 13 472 - -
Apr1g0400 473 CDD STKc_CDK8_like 25 336 - -
Apr1g0400 473 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Apr1g0400 473 PANTHER CYCLIN-DEPENDENT KINASE E-1 13 472 - -
Apr1g0400 473 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Apr1g0400 473 MobiDBLite consensus disorder prediction 370 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0400 Apr-Chr1 5013761 5021574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0400 1 473 Core Cell Cycle Gene Families AT5G63610 75.574 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Apr1g0400 Pkinase 5.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0400 K02208 - gmx:100813433 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0400 1 5013761 5021574 Apr1g0400 1 5013761 5021574 ECH
Apr2g1061 2 16951820 16964491 Apr1g0400 1 5013761 5021574 ECH