Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0388 ATGGGTGCATCTCCACCTTTGCCAATAGCGTACGAGGCAGGGACGAGCGAGGCAGTACCTGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTAGCAGCAACACTAGTTGGGATTCAAAGCATGCCAGGGTTAGTGATCCTATATGGTAGCATAGTGAAGAAGAAGTGGGCCGTGAACTCTGCTTTCATGGCCCTATATGCATTTGCAGCGGTTCTTATTTGTTGGGTCACTTGGGCTTACAAGATGTCCTTTGGGAGAAAGTTGTTACCCTTATGGGGAAGAGCAGGCCCAGCTTTGGGACAAAAGTTTCTCATCAAACAAGCCATTTTGCCAGCTACAAGGCATTTCTATGAGAATGGAACTATAGAGACTCCAGAGATTGAGCCCTTTTATCCTATGGCTAGCATGGTCTGGTTTCAGTGTGTTTTTGCTGCCATCACTGTGATTATCTTGGCGGGATCAGTGTTGGCTAGGATGAATTTCAAGGCCTGGATGATGTTTGTGCCTCTTTGGGTTACTTTTTCTTATACTGTTGGTGCCTTCAGCTTGTGGGGTGGTGGCTTCTTGTTCCAATGGGGTGTTATGGACTATTCTGGTGGTTATGTCATTCATCTCTCTTCTGGGATTGCAGGCTTCACTGCTGCTTATTGGGTGGGACCAAGATCAAGGAAGGACAGGGAAAGATTCCCACCAAACAATGTGTTACTAACGTTGGCAGGAGCAGGACTACTATGGCTAGGATGGGCAGGGTTCAATGGAGGAGATCCTTACGCTGCCAACACAGATTCATCCATGGCTGTGTTAAATACCAACGTGAGTGCTGCTACTAGCCTTCTTGTGTGGACATGGCTCGATGTTATTTTCTTCAAGAAACCCTCCGTTATTGGAGCCGTTCAGGGCATGATCACTGGCCTCGTTTGCATCACTCCCGCTGCTGGTTTGGTTCAAGCATGGGCAGCCATAGTGATGGGAGTTCTATCAGGTAGTGTTCCATGGTTCACGATGATGATATTGGGAAAGAAATTGAAAGTGTTGGAAAATGTTGATGACACCCTAGCGGTTTTCCACACTCATGCTGTGGCTGGATTCCTAGGTGGTATACTCACGGGTCTCTTCGCTGAGCCACGTCTATGTGCACTTTTCATGTCTGTTACAAACTCTAGAGGTGGAGTCTATGGAGGCTCAGGTGGAGTCCAAATCCTTAAACAAATTGTGGGTGGATTGTTTATCATTGGATGGAACCTCGTTGTCACCTCAATTATTTGTTTAGTCATTGGTTTCATTGTTCCGTTGAGAATGTCTGAGGAAGAGTTGCTCATTGGAGATGATGCTGTTCATGGGGAAGAAGCTTATGCTTTGTGGGGTGATGGGGAGAAACTTAGCTTTTACACTGAGGAGTCCACCCTCCATGGAATGGCTTCAAGTGGTGCCACCCAAGTGGTTTAA 1452 0.4683 MGASPPLPIAYEAGTSEAVPDWLNKGDNAWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVTWAYKMSFGRKLLPLWGRAGPALGQKFLIKQAILPATRHFYENGTIETPEIEPFYPMASMVWFQCVFAAITVIILAGSVLARMNFKAWMMFVPLWVTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSRKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVSAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQAWAAIVMGVLSGSVPWFTMMILGKKLKVLENVDDTLAVFHTHAVAGFLGGILTGLFAEPRLCALFMSVTNSRGGVYGGSGGVQILKQIVGGLFIIGWNLVVTSIICLVIGFIVPLRMSEEELLIGDDAVHGEEAYALWGDGEKLSFYTEESTLHGMASSGATQVV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0388 483 TIGRFAM amt: ammonium transporter 27 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr1g0388 483 Gene3D Ammonium transporter AmtB like domains 9 456 IPR029020 -
Apr1g0388 483 SUPERFAMILY Ammonium transporter 22 435 - -
Apr1g0388 483 PANTHER AMMONIUM TRANSPORTER MEP2 18 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr1g0388 483 ProSitePatterns Ammonium transporters signature. 198 223 IPR018047 GO:0008519|GO:0016020|GO:0072488
Apr1g0388 483 PANTHER AMMONIUM TRANSPORTER 18 463 - -
Apr1g0388 483 Pfam Ammonium Transporter Family 29 453 IPR024041 GO:0008519|GO:0016020|GO:0072488
Apr1g0388 483 PRINTS Rhesus blood group protein signature 142 158 IPR002229 GO:0005887
Apr1g0388 483 PRINTS Rhesus blood group protein signature 237 255 IPR002229 GO:0005887
Apr1g0388 483 PRINTS Rhesus blood group protein signature 268 290 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0388 Apr-Chr1 4862427 4864529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0388 135 482 Inorganic Solute Cotransporters AT2G38290 68.169 3.41e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0388 K03320 - gmx:100785993 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0388 1 4862427 4864529 Apr1g0388 1 4862427 4864529 ECH